View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_high_40 (Length: 201)
Name: NF19360_high_40
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 1351183 - 1351017
Alignment:
| Q |
17 |
caaaggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtgga |
116 |
Q |
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| T |
1351183 |
caaaggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtgga |
1351084 |
T |
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| Q |
117 |
caccaacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgttt |
183 |
Q |
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| T |
1351083 |
caccaacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgttt |
1351017 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 4560855 - 4560896
Alignment:
| Q |
102 |
actttctcttgtggacaccaacctaccattagtcctctatct |
143 |
Q |
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| T |
4560855 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4560896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 4574657 - 4574698
Alignment:
| Q |
102 |
actttctcttgtggacaccaacctaccattagtcctctatct |
143 |
Q |
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| T |
4574657 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4574698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 1965248 - 1965204
Alignment:
| Q |
38 |
actttcaattgttgaattccaaccacagtgactcaaaaaccctcc |
82 |
Q |
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| T |
1965248 |
actttcaagggttgagttccaaccacagtgactcaagaaccctcc |
1965204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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