View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19360_high_8 (Length: 424)
Name: NF19360_high_8
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 40450838 - 40450599
Alignment:
| Q |
11 |
catcatcatctaagaacaaaaatatgttcctccatagctccatagaatcagatgcttctatagctttcttccttctcttttcctctttacttttcgttgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40450838 |
catcatcatctaagaacaaaaatatgttcctccatagctccatagaatcagatgcttctatagctttcttccttctcttttcctctttacttttcgttgc |
40450739 |
T |
|
| Q |
111 |
ttattccatttttaaacgatagctaaaattctcttatctcttttcccctttattctagttttcttcnnnnnnnngtccaaaaacaataaaatcatctcat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40450738 |
ttattccatttttaaacgatagctaaaattctcttatctcttttcccctttattctagttttcttcaaaaaaaagtccaaaaacaataaaatcatctcat |
40450639 |
T |
|
| Q |
211 |
cttttaggaacaattccggcttggttacaggcatttgaac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40450638 |
cttttaggaacaattccggcttggttacaggcatttgaac |
40450599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 328 - 424
Target Start/End: Complemental strand, 40450521 - 40450424
Alignment:
| Q |
328 |
gacttataaaaggccgattaaaacatattatcattgatacagagatcttgtttactttgtgaaatattta-tagctgataagaagataaactcttgaa |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40450521 |
gacttataaaaggccgattaaaacatattatcattgataccgagatcttgtttactttgtgaaatatttattagctgataagaagataaactcttgaa |
40450424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University