View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_12 (Length: 398)
Name: NF19360_low_12
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 381
Target Start/End: Complemental strand, 42622513 - 42622135
Alignment:
| Q |
4 |
gatgctcaaactatatagtagtaattattgagggaaagggaaaaccagaaccaaggtgtgttcttaaaagggaaaattaagttaaatttattatgaacat |
103 |
Q |
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| T |
42622513 |
gatgctcaaactatatagtagtaattattgagggaaagggaaaaccagaaccaaggtatgctcttaaaagagaaaattaagttaaaattattatgaacat |
42622414 |
T |
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| Q |
104 |
agttgagcatattccataacactgaaacataacattccccaatgctcaaactatacagtagtaattatacctggtatcaccaagctattgaacaatttct |
203 |
Q |
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| T |
42622413 |
agttgagtatattccataacactgaaacat-acattccccaatgctcaaactatacagtagtaattatacctggtatcaccaagctattgaacaatttct |
42622315 |
T |
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| Q |
204 |
agttctgccaaaatggtttcaagacaaac--nnnnnnnnnnnnnnnnnncacctactatagtgatggaacatacctaataagttccctgagaaacacttc |
301 |
Q |
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| T |
42622314 |
agttctgccaaaatggtttcaagacaaacaaaaaaaaaaaaagcaaaaacacctactatagtgatggaacatacctaataagttccctgagaaacacttc |
42622215 |
T |
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| Q |
302 |
cttgttactgtataaactgttaacaatgaggtccatgagccgactaacctgccaaaacaaatatatcacaatatattaac |
381 |
Q |
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| T |
42622214 |
cttgttactgtataaactgttaacaatgaggtccatgagccgactaacctgccaaaacaaatatatcacaatatattaac |
42622135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 42622628 - 42622486
Alignment:
| Q |
29 |
tattgagggaaagggaaaaccagaaccaaggtgtgttcttaaaagggaaaattaagttaaatttattatgaacatagttgagcatattccataacactga |
128 |
Q |
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| T |
42622628 |
tattgggggaaagggaaaaccagaaccaaggtgtgttcttaaaagggaaaattaagttaaatttattatgaacatagttgagcatattccataacactga |
42622529 |
T |
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| Q |
129 |
aacataacattccccaatgctcaaactatacagtagtaattat |
171 |
Q |
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| T |
42622528 |
aacataacattcaccgatgctcaaactatatagtagtaattat |
42622486 |
T |
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