View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_14 (Length: 385)
Name: NF19360_low_14
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 1802485 - 1802127
Alignment:
| Q |
19 |
aattgttttgataattttctaagaagaattattgaggttagttactctaaaccgtggttattcacgtgttttgaagagtgttatcactttaaagtttgat |
118 |
Q |
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| T |
1802485 |
aattgttttgataattttctaagaagaattattgaggttagttactctaaaccgtggttattcacgtgttttgaagagtgttatcactttaaagtttgat |
1802386 |
T |
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| Q |
119 |
ctaatagtaaaaagttaggtcttaagatcaagagtttcaggtttagagtctcaccagttattgcctgtgattttgaattatatataatgatttgatgagg |
218 |
Q |
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| T |
1802385 |
ctaatagtaaaaagttaggtcttaagatcaagagtttcaggtttagagtctcaccagttattgcctgtgattttgaattatatataatgatttgatgagg |
1802286 |
T |
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| Q |
219 |
ttacttgcattttagctatagaacgtgttttgatacctgacaacaaactgtcgttaattctaaaatatatataattaaactcgtgtatatcataatttca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1802285 |
ttacttgcattttagctatagaacgtgttttgatacctgacaacaaactgttgttaattctaaaatatatataattaaactcgtgtatatcataatttca |
1802186 |
T |
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| Q |
319 |
ttttgatcaggtgtacgtatatagtcaacgtactccacgtttatattaacccctttgct |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1802185 |
ttttgatcaggtgtacgtatatagtcaacgtactccacgtttatattaacccttttgct |
1802127 |
T |
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