View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_17 (Length: 357)
Name: NF19360_low_17
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 139 - 347
Target Start/End: Original strand, 27845219 - 27845427
Alignment:
| Q |
139 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtagggaataagttagtacctgttatatttgtacataagtctaccaagagggac |
238 |
Q |
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| T |
27845219 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtcgggaataagttagtacctgttatatttgtacatatgtctaccaagagggac |
27845318 |
T |
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| Q |
239 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnnggaatcaagggatatagctttattt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27845319 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgtttttttttggaatcaagggatatagctttattt |
27845418 |
T |
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| Q |
339 |
taacctttg |
347 |
Q |
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||||||||| |
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| T |
27845419 |
taacctttg |
27845427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 27845085 - 27845134
Alignment:
| Q |
17 |
aatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
66 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
27845085 |
aatatattagtgtctttcgttgatgtacggtaggatcaatgatgatatgg |
27845134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 20140192 - 20140259
Alignment:
| Q |
237 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttg |
304 |
Q |
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| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttg |
20140259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 22192677 - 22192610
Alignment:
| Q |
237 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttg |
304 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttg |
22192610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 20140100 - 20140149
Alignment:
| Q |
17 |
aatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
66 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20140100 |
aatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
20140149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22192769 - 22192720
Alignment:
| Q |
17 |
aatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
66 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22192769 |
aatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
22192720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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