View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_18 (Length: 339)
Name: NF19360_low_18
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_18 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 18005311 - 18004986
Alignment:
| Q |
13 |
catcatcatgcctaacatcgaattaacataacaaaaccctaattaacatatgaaaatgactgttnnnnnnnngttgaaatagcaactgaagtttagagac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
18005311 |
catcatcatgcctaacatcgaattaacataacaaaaccctaattaacatatgaaaatgactgttaaaaaaa-gttgaaatagcagcagaagtttagagac |
18005213 |
T |
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| Q |
113 |
aagaacatgcaaaatagttatataactttgttactatgtattagaaacttcaagtttgatcacaagttccttttctccatctccttagtgaattataaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18005212 |
aagaacatgcaaaatagttatataactttgttactaagtattagaaacttcaagtttgatcacaagttccgtttctccatctccttagtgaattataaat |
18005113 |
T |
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| Q |
213 |
tattactccataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtataggaaggcgtggaacac |
312 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18005112 |
tattactcaataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtataggaaggcgtggaacac |
18005013 |
T |
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| Q |
313 |
cagggacagggagtgtagggattggta |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
18005012 |
cagggacagggagtgtagggattggta |
18004986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 20644850 - 20644525
Alignment:
| Q |
13 |
catcatcatgcctaacatcgaattaacataacaaaaccctaattaacatatgaaaatgactgttnnnnnnnngttgaaatagcaactgaagtttagagac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
20644850 |
catcatcatgcctaacatcgaattaacataacaaaaccctaattaacatatgaaaatgactgttaaaaaaa-gttgaaatagcagcagaagtttagagac |
20644752 |
T |
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| Q |
113 |
aagaacatgcaaaatagttatataactttgttactatgtattagaaacttcaagtttgatcacaagttccttttctccatctccttagtgaattataaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20644751 |
aagaacatgcaaaatagttatataactttgttactaagtattagaaacttcaagtttgatcacaagttccgtttctccatctccttagtgaattataaat |
20644652 |
T |
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| Q |
213 |
tattactccataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtataggaaggcgtggaacac |
312 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20644651 |
tattactcaataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtataggaaggcgtggaacac |
20644552 |
T |
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| Q |
313 |
cagggacagggagtgtagggattggta |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
20644551 |
cagggacagggagtgtagggattggta |
20644525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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