View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19360_low_2 (Length: 538)
Name: NF19360_low_2
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_2 |
 | |
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| [»] scaffold0060 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 193 - 523
Target Start/End: Original strand, 18979443 - 18979773
Alignment:
| Q |
193 |
gagtgtatcaaagtattagttacaatttcttaaaaatatctgtaccggggatctaaacctaagcaagcaagctctctcatctaaaatagatatttatgat |
292 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| | | | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
18979443 |
gagtgtatcaaagtattagttactatttcctaaaaatatttatgctggggatctaaacctaagcaagcaagctgcctcatctaaaatagatacttatgat |
18979542 |
T |
|
| Q |
293 |
gctactattatcactcccattaccacttatgatgagaatcttggacctgataaaggcataatatctcaacctgtcaactttaaaaacacttttgaagctt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
18979543 |
gctactattatcactcccattaccacttatgatgagaatcttggacctgacaaaggcatgatatctcaacctgccaactttaaaaacacttctgaagctt |
18979642 |
T |
|
| Q |
393 |
gcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttggattctaatcatgcttctgatgatgagacagatatgcgtgatgagcaagagga |
492 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18979643 |
gcaagaaaaatgaaaaacttctgagtaaattctgggctgaaggtttggattctgatcatgcttctgatgatgagacagatatgcgtgatgagcaagagca |
18979742 |
T |
|
| Q |
493 |
gcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
18979743 |
gcaccttgaaagagatattgaggagggaagt |
18979773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 18978272 - 18978391
Alignment:
| Q |
12 |
gatgatgatttggatgaatgatcacatgtgtttgttctttcttgaccnnnnnnntgaaataaaacgtcttgctaaagatgctaaagttacaaattatttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18978272 |
gatgatgatttggatgaatgatcacatgtgtttgttctttcttgacaaaaaaaatgaaataaaacgtcttgctaaagatgctaaagttacaaattatttc |
18978371 |
T |
|
| Q |
112 |
atataaaatattaaatactt |
131 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
18978372 |
atataaaatattaaatactt |
18978391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 239 - 523
Target Start/End: Complemental strand, 1558819 - 1558535
Alignment:
| Q |
239 |
ggggatctaaacctaagcaagcaagctctctcatctaaaatagatatttatgatgctactattatcactcccattaccacttatgatgagaatcttggac |
338 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
1558819 |
ggggatccaaacctaagcaagcaagctgcctcatctaaaatagctacttatgatgctactattatcactcctattaccacttatgatgagaatcttggac |
1558720 |
T |
|
| Q |
339 |
ctgataaaggcataatatctcaacctgtcaactttaaaaacacttttgaagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggttt |
438 |
Q |
| |
|
|||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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|
| T |
1558719 |
ctgacaaagacatgatatctcaacctgctaactttaaaaacacttttgaagcttgcaagaaaagtgaaaaacttttgagcaaattctgggctgatggttt |
1558620 |
T |
|
| Q |
439 |
ggattctaatcatgcttctgatgatgagacagatatgcgtgatgagcaagaggagcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
||||| | |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
1558619 |
ggattttgatcatgcttctgatgaggagacaaatatgcgtgatgagcaagagcagcaccttgaaagagatattgagaagggaagt |
1558535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 523
Target Start/End: Complemental strand, 3959165 - 3959099
Alignment:
| Q |
457 |
tgatgatgagacagatatgcgtgatgagcaagaggagcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
|||||| ||||| |||||| |||||| | ||||| || |||||||| ||||||||||||||| |||| |
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|
| T |
3959165 |
tgatgaagagacggatatgagtgatgtggaagagcagaaccttgaaggagatattgaggaggaaagt |
3959099 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 239 - 523
Target Start/End: Original strand, 48769520 - 48769804
Alignment:
| Q |
239 |
ggggatctaaacctaagcaagcaagctctctcatctaaaatagatatttatgatgctactattatcactcccattaccacttatgatgagaatcttggac |
338 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
48769520 |
ggggatccaaacctaagcaagcaagctgcctcatctaaaatagctacttatgatgctactattatcactcccattaccacttatgatgagaatcttcgac |
48769619 |
T |
|
| Q |
339 |
ctgataaaggcataatatctcaacctgtcaactttaaaaacacttttgaagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggttt |
438 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| |||| ||||| |||| ||||||||| |
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|
| T |
48769620 |
ctgacaaaggcaggatatctcaacctgctaactttgaaaacacttctgaagcttgcaaggaaagtgaaaaacttttgagcaaattctgggatgatggttt |
48769719 |
T |
|
| Q |
439 |
ggattctaatcatgcttctgatgatgagacagatatgcgtgatgagcaagaggagcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
||||||| |||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
48769720 |
ggattctgatcatgctcctgatgaggagacaaatatgcgtgatgagcaagagcagcaccttgaaaaagatattgaggagggaagt |
48769804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 291 - 523
Target Start/End: Complemental strand, 43404286 - 43404054
Alignment:
| Q |
291 |
atgctactattatcactcccattaccacttatgatgagaatcttggacctgataaaggcataatatctcaacctgtcaactttaaaaacacttttgaagc |
390 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||| |||||| |||| |||||| |
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|
| T |
43404286 |
atgccactattatcactcccattaccacttatgatgagaattttggacctgacaaaggcaggatatctcaacctgccaactctaaaaatacttctgaagc |
43404187 |
T |
|
| Q |
391 |
ttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttggattctaatcatgcttctgatgatgagacagatatgcgtgatgagcaagag |
490 |
Q |
| |
|
||||||||||||||||||||||||| | || || | |||||||| ||||||||| ||||||||| | |||| || | |||||| | |||||||||||| |
|
|
| T |
43404186 |
ttgcaagaaaagtgaaaaacttctgcgcaagttataggctgatgaattggattctgatcatgcttatcatgaggataaggatatgagcgatgagcaagag |
43404087 |
T |
|
| Q |
491 |
gagcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
|| ||||||| ||||| ||| |||||||||| |
|
|
| T |
43404086 |
cagaaccttgatagagacattacggagggaagt |
43404054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 441
Target Start/End: Complemental strand, 34106846 - 34106787
Alignment:
| Q |
382 |
ttttgaagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttgga |
441 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||||| |||||||||||||||||| |||||| |
|
|
| T |
34106846 |
ttttgaggcttgcaggaaaagtgagaatattctgcgtaaattttgggctgatgatttgga |
34106787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 41114175 - 41114229
Alignment:
| Q |
387 |
aagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttgga |
441 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| ||||||| ||| ||||||||||| |
|
|
| T |
41114175 |
aagcttgcaggaaaagtgagaaaattctgagcaaattttaggcagatggtttgga |
41114229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 43699059 - 43699113
Alignment:
| Q |
387 |
aagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttgga |
441 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
43699059 |
aagcttgcaggaaaagtgagaaaattctgagcaaattttgggcagatgatttgga |
43699113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 239 - 523
Target Start/End: Original strand, 26154907 - 26155191
Alignment:
| Q |
239 |
ggggatctaaacctaagcaagcaagctctctcatctaaaatagatatttatgatgctactattatcactcccattaccacttatgatgagaatcttggac |
338 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26154907 |
ggggatccaaatctaagcaagcaagctacctcatctaaaatcgctacttatgatgctactattatcactcccattaccacttatgatgagaatcttggac |
26155006 |
T |
|
| Q |
339 |
ctgataaaggcataatatctcaacctgtcaactttaaaaacacttttgaagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggttt |
438 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| || |
|
|
| T |
26155007 |
ctgacaaaggcaggatatctcaacctgccaactctaaaaatacttctgaagcttgcaagaaaagtgaaaaacttctgagcaaattctgggctggtgggtt |
26155106 |
T |
|
| Q |
439 |
ggattctaatcatgcttctgatgatgagacagatatgcgtgatgagcaagaggagcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
||||||| | |||||| ||||||| ||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
26155107 |
ggattctgaccatgctcctgatgaggagacggatatgagtgatgagcaagagcagaaccttgaaagagatattgaggagggaagt |
26155191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 2612926 - 2612872
Alignment:
| Q |
387 |
aagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttgga |
441 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
2612926 |
aagcttgcaggaaaagtgagaaaattctgagaaaattttgggcagatgatttgga |
2612872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 19168031 - 19168093
Alignment:
| Q |
456 |
ctgatgatgagacagatatgcgtgatgagcaagaggagcaccttgaaagagatattgaggagg |
518 |
Q |
| |
|
||||||| ||||| |||||| |||||| ||||||| | |||||||| ||||||||||||||| |
|
|
| T |
19168031 |
ctgatgaagagacggatatgagtgatgtgcaagagcataaccttgaaggagatattgaggagg |
19168093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 251 - 523
Target Start/End: Original strand, 40274778 - 40275050
Alignment:
| Q |
251 |
ctaagcaagcaagctctctcatctaaaatagatatttatgatgctactattatcactcccattaccacttatgatgagaatcttggacctgataaaggca |
350 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40274778 |
ctaagcaagcaagctgcctcatctaaaatagctacttaggatgctactattaccactcccattaccacttatgatgagaatcttggacctgacaaaggca |
40274877 |
T |
|
| Q |
351 |
taatatctcaacctgtcaactttaaaaacacttttgaagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttggattctaatca |
450 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||| |||| |
|
|
| T |
40274878 |
ggatatctcaacctgccaactctaaaaatacttttgaagcttgcaagaaaagtgaaaaacttctaagcaaattatgggctgataaattggattctgatca |
40274977 |
T |
|
| Q |
451 |
tgcttctgatgatgagacagatatgcgtgatgagcaagaggagcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||||||| || ||||||| ||| |||||| |||||||||| |
|
|
| T |
40274978 |
tgcttctgatgaggagaaggatatgagtgatgagcaagagcagaaccttgatagaaatattgcggagggaagt |
40275050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 523
Target Start/End: Original strand, 18771 - 18838
Alignment:
| Q |
456 |
ctgatgatgagacagatatgcgtgatgagcaagaggagcaccttgaaagagatattgaggagggaagt |
523 |
Q |
| |
|
||||||| ||||| |||| | |||||||||||||| || | |||||| |||||||||||||||||||| |
|
|
| T |
18771 |
ctgatgaagagacggatacgagtgatgagcaagagcagaagcttgaaggagatattgaggagggaagt |
18838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 8858890 - 8858946
Alignment:
| Q |
385 |
tgaagcttgcaagaaaagtgaaaaacttctgagtaaattttgggctgatggtttgga |
441 |
Q |
| |
|
||||||||| | ||||||||| ||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
8858890 |
tgaagcttgtaggaaaagtgagaaaattctgagcaaattttgggcagatgatttgga |
8858946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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