View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19360_low_22 (Length: 308)
Name: NF19360_low_22
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 49294882 - 49294603
Alignment:
| Q |
13 |
aaggagacaaattaggcaaataagaacccctgtattgcaaacaaagcaatactagcttaagcaaaatcatcagtaaatcaacactcaacacaaggaacct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49294882 |
aaggagacaaattaggcaaataagaacccctgtattgcaaacaaagcaatactagcttaagcaaaatcatcagtaaatcaacactcaacacaaggaacct |
49294783 |
T |
|
| Q |
113 |
caaaaatcacaatacatcagaaaaccatttacttgagagaattaaaactaagcaaatgttccgaattcgaatcccagtgatgggaatagagctgcatttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49294782 |
caaaaatcacaatacatcagaaaaccatttacttgagagaattaaaactaagcaaatgttccgaattcgaatcccagtgatgggaatagagctgcatttg |
49294683 |
T |
|
| Q |
213 |
ttgggggaggagttgtcccttggctgttactctacattctaaggggattagacctatgactttttgtttgaataacaaat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49294682 |
ttgggggaggagttgtcccttggctgttactctacattctaaggggattagacctatgactttttgtttgaataacaaat |
49294603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University