View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19360_low_25 (Length: 279)
Name: NF19360_low_25
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_25 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27926967 - 27927231
Alignment:
| Q |
1 |
caataaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattc-ataacttcaggaatccatgaagagc |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
27926967 |
caataaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactttcgcttgaggattccataacttcaggaatccatgaagagc |
27927066 |
T |
|
| Q |
100 |
agaaagaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgtaaacattcaaaacatgaaaaatgtatgattggttatgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27927067 |
agaaagaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgtaaacattcaaaacatgaaaaatgtatgattggttatgt |
27927166 |
T |
|
| Q |
200 |
gaaagtaacagcaaacacaaacaaaacgtgcacaactatatcacaaaaaaggcgcattcagaata |
264 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
27927167 |
gaaagtaacagcaaacacgaacaaaatgtgcacaactatatgacaaaaaaggcgcattcagaata |
27927231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 28086863 - 28086608
Alignment:
| Q |
5 |
aaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| ||||||| |||||| ||||||| |
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| T |
28086863 |
aaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaacttttgcatgagggttcataactccaggaatacatgaattgcagaaa |
28086764 |
T |
|
| Q |
105 |
gaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgt-aaacattcaaaacatgaaaaatgtatgattggttatgtgaaa |
203 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28086763 |
gaaaaaaatttccttccataacctttggcgtcgccatatagagaattgtggaactgtaaaacattcaaaacaggaaaaatgtatgattggttatgtgaaa |
28086664 |
T |
|
| Q |
204 |
gtaacagcaaacacaaacaaaacgtgcacaactatatcacaaaaaaggcgcattca |
259 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
28086663 |
gtaacagcaaacacaaacagaacgtgcacaactatatgacaaaaaaggtgcattca |
28086608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 28026443 - 28026190
Alignment:
| Q |
7 |
aaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaaga |
106 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||| || || |||||||| ||||||| || ||||| |||||||| |
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|
| T |
28026443 |
aaattgcgactatgcaaaatatggccaaaaacttgttccattgttgtacaactttcgcatgggggttcataacaccaggaatacacgaagaacagaaaga |
28026344 |
T |
|
| Q |
107 |
aaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgtaaa-cattcaaaacatgaaaaatgtatgattggttatgtgaaagt |
205 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28026343 |
aaaaagttttcttccataacctttggtgtcaccataaagagaattgtggaactgtaaatcattcaaaacatgaaaaatgtatgattggttacatgaaagt |
28026244 |
T |
|
| Q |
206 |
aacagcaaacacaaacaaaacgtgcacaactatatcacaaaaaaggcgcattca |
259 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||| || ||||||||| ||||| |
|
|
| T |
28026243 |
cacagcaaagacgaacaaaacgtgcataactatatgacgaaaaaggcgaattca |
28026190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 28056223 - 28055985
Alignment:
| Q |
5 |
aaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaa |
104 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||||||| ||||||| ||||||||||||||| |
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|
| T |
28056223 |
aaaaattgtgaccatgcaaaatatggccaaaaccttgttccattgtagtacgactttcgtgtgagggttcataactccaggaatacatgaagagcagaaa |
28056124 |
T |
|
| Q |
105 |
gaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgtaaacattcaaaacatgaaaaatgtatg---attggttatgtga |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
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|
| T |
28056123 |
gaaaaaagttttcttccaaaacctttggtgtcgccatgaagagaattgtggaactgtaaacatttaaaacatgaaaaatatatgattattggttatgtga |
28056024 |
T |
|
| Q |
202 |
aagtaacagcaaacacaaacaaaacgtgcacaactatat |
240 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
28056023 |
aagtaacagcaaacgcgaacaaaacgtggacaactatat |
28055985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 28012191 - 28012002
Alignment:
| Q |
5 |
aaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaa |
104 |
Q |
| |
|
||||||||| || ||||||| ||||||||||| |||||||||| ||||||||| | | || |||||||||| |||||| |||||||||||| || |
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|
| T |
28012191 |
aaaaattgcaacaaagcaaattatggccaaaaacttgttccataagtgtacaactttacagtcggggttcataactttaggaatacatgaagagcaggaa |
28012092 |
T |
|
| Q |
105 |
gaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactg---taaacattcaaaacatgaaaaatgtatgatt |
191 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
28012091 |
gaaaaaagttttcttccaaaacctttggcgtctccatacagagaatttcggaactgttataatcattcaaaacatgaaaaatgtatgatt |
28012002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 27906847 - 27906676
Alignment:
| Q |
8 |
aattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaagaa |
107 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||||||||||||||||| || |||||| || || ||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
27906847 |
aattgcgaccaagcaaaatatgtccaacaacttgttccattgttgtataattctcgcgtgtgggttcataactcctggaatacatgaagagcagaaagaa |
27906748 |
T |
|
| Q |
108 |
aaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgtaaacattcaaaacatgaa |
179 |
Q |
| |
|
| || ||| ||||| |||||||||| | |||| ||||||||| | ||| |||||||||||||||||| |
|
|
| T |
27906747 |
tacagattttttccaaaacctttggcatcaccatgaagagaattctcagactacaaacattcaaaacatgaa |
27906676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 27995912 - 27995755
Alignment:
| Q |
5 |
aaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaa |
104 |
Q |
| |
|
|||||||||||| ||||| |||| || |||| |||||||||||||||| ||| | ||||| ||||||||| |||||| ||||||||||| ||| |
|
|
| T |
27995912 |
aaaaattgcgactgagcaagatatagcaaaaattgtgttccattgttgtacgactttacagtgagggttcataactctaggaatacatgaagagcaaaaa |
27995813 |
T |
|
| Q |
105 |
gaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgta |
162 |
Q |
| |
|
|| |||||||||||||| ||| |||||| ||||||| ||| ||||||| ||||||| |
|
|
| T |
27995812 |
gataaaagttttcttccgaaacaattggcgtcgccatagagaaaattgtgaaactgta |
27995755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 28529469 - 28529297
Alignment:
| Q |
5 |
aaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaa |
104 |
Q |
| |
|
||||||||| | || |||||| ||||||| || |||||||||||||| |||| | | | ||||| || |||||| |||||| ||||||||||||||| |
|
|
| T |
28529469 |
aaaaattgccagcatgcaaaaaatggccagaaatttgttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaa |
28529370 |
T |
|
| Q |
105 |
gaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgtaaacattcaaaacatg |
177 |
Q |
| |
|
|| |||| | ||| ||| |||| ||||| | |||||||| | ||| ||||||||||||||||||| ||||| |
|
|
| T |
28529369 |
gagaaaaaatctctcccaaaacccttggcatctccataaagtgcattttggaactgtaaacattcaagacatg |
28529297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 1435530 - 1435318
Alignment:
| Q |
5 |
aaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgttgtacaactctcgcttgaggattcataacttcaggaatccatgaagagcagaaa |
104 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||||| ||||||| | | | ||||| ||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
1435530 |
aaaaattgcgagcaggcaaaatatggccaaaaacttgttccattgctgtacaatttttgtgtgagggttcatcactccaggaatacatgaagagcagaaa |
1435431 |
T |
|
| Q |
105 |
gaaaaaagttttcttccataacctttggcgacgccataaagagaattgtggaactgtaaacattcaaaacatgaaaaatgtatgattggttatgtgaaag |
204 |
Q |
| |
|
||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1435430 |
gaataaacttttcgtccataacctttggcgtcgccataaagagaattgtggaactgtaaacattcaaaacatgaaaaatgtatgatcgtttatgtgaaag |
1435331 |
T |
|
| Q |
205 |
taacagcaaacac |
217 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1435330 |
taacagcaaacac |
1435318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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