View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19360_low_29 (Length: 257)
Name: NF19360_low_29
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 33721469 - 33721716
Alignment:
| Q |
1 |
tttaacatgtccttggtatttccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721469 |
tttaacatgtccttggtatttccaaggaagttatagttgcttcaaatctttcagggatagtcacgagtattttctgaactattcttgaatcagataattc |
33721568 |
T |
|
| Q |
101 |
agaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721569 |
agaaccatgcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcga |
33721668 |
T |
|
| Q |
201 |
atcaaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721669 |
atcaaattaagtgcttgcatccccctaattctttcatctccttcatat |
33721716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 26712297 - 26712373
Alignment:
| Q |
147 |
gcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccc |
223 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||| || | |||||||| || |||||||||| |
|
|
| T |
26712297 |
gcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccc |
26712373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 626905 - 626657
Alignment:
| Q |
1 |
tttaacatgtccttggtattt-ccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataatt |
99 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
626905 |
tttaacatgtcctttgtattttccaaggaagttatagttgcttcaaatctttcagggacagtcacaagtattttctgacctattcttgaatcagataatt |
626806 |
T |
|
| Q |
100 |
cagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626805 |
cagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcc |
626706 |
T |
|
| Q |
200 |
aatcaaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626705 |
aatcaaattaagtgcttgcatccccctaattctttcatctccttcatat |
626657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 29868377 - 29868133
Alignment:
| Q |
5 |
acatgtccttggtattt-ccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcaga |
103 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29868377 |
acatgtccttggtattttccaaggaagtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcaga |
29868278 |
T |
|
| Q |
104 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29868277 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
29868178 |
T |
|
| Q |
204 |
aaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29868177 |
aaattaagcgcttgcattcccctaattctttcatctccttcatat |
29868133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 28698682 - 28698930
Alignment:
| Q |
1 |
tttaacatgtccttggtattt-ccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataatt |
99 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28698682 |
tttaacatgtccttggtattttccaaggaagttatagttgcttcaaatcttttagggatagtcacgagtattttctgaactattcttgaatcagataatt |
28698781 |
T |
|
| Q |
100 |
cagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcg |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28698782 |
cagaaccaaacaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcg |
28698881 |
T |
|
| Q |
200 |
aatcaaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28698882 |
aatcaaattaagtgtttgcatccccctaattctttcatctccttcatat |
28698930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 20785972 - 20786216
Alignment:
| Q |
5 |
acatgtccttggtattt-ccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcaga |
103 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20785972 |
acatgtccttggtattttccaaggaagtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcaga |
20786071 |
T |
|
| Q |
104 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20786072 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
20786171 |
T |
|
| Q |
204 |
aaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20786172 |
aaattaagcgcttgcattcccctaattctttcatctccttcatat |
20786216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 29470089 - 29469845
Alignment:
| Q |
5 |
acatgtccttggtattt-ccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcaga |
103 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29470089 |
acatgtccttggtattttccaaggaagtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcaga |
29469990 |
T |
|
| Q |
104 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469989 |
accaagcaatcttactttgttagcaatgttaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
29469890 |
T |
|
| Q |
204 |
aaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29469889 |
aaattaagcgcttgcattcccctaattctttcatctccttcatat |
29469845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 45998411 - 45998507
Alignment:
| Q |
127 |
caatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccc |
223 |
Q |
| |
|
||||||| | |||||| | |||||||||||| |||||||| |||||||||||| ||||||||||| || | |||||||| || |||||||||| |
|
|
| T |
45998411 |
caatgcttagaagtttgtctgcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccc |
45998507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 9795058 - 9795134
Alignment:
| Q |
147 |
gcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccc |
223 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||| || | |||||||| || |||||||||| |
|
|
| T |
9795058 |
gcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccc |
9795134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 19965843 - 19965599
Alignment:
| Q |
5 |
acatgtccttggtattt-ccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcaga |
103 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19965843 |
acatgtccttggtattttccaaggaagtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcaga |
19965744 |
T |
|
| Q |
104 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19965743 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctctaatc |
19965644 |
T |
|
| Q |
204 |
aaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19965643 |
aaattaagcgcttgcattcccctaattctttcatctccttcatat |
19965599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 21027153 - 21027397
Alignment:
| Q |
5 |
acatgtccttggtattt-ccagggaagttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcaga |
103 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21027153 |
acatgtccttggtattttccaaggaagtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcaga |
21027252 |
T |
|
| Q |
104 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21027253 |
accaagcaatcttactttgttagcaatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcaaatc |
21027352 |
T |
|
| Q |
204 |
aaattaagtgcttgcatccccctaattctttcatctccttcatat |
248 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21027353 |
aaattaagcgcttgcattcccctaattctttcatctccttcatat |
21027397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 6367789 - 6367851
Alignment:
| Q |
182 |
ttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaattctttcatctccttc |
244 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
6367789 |
ttgcatctcaaattctcgaatgaaattaagcgcttgcattcccctaattctttcatctccttc |
6367851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University