View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_3 (Length: 521)
Name: NF19360_low_3
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Original strand, 10062323 - 10062818
Alignment:
| Q |
8 |
tgagatgaataaaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacagattttggtaagcttaactctgcctctagtgtgatagcga |
107 |
Q |
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| T |
10062323 |
tgagaagaataaaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacggattttggtaagcttaactctgcctctagtgtgatagcga |
10062422 |
T |
|
| Q |
108 |
tttgtttaaattcaactatgcaataggctgtagcactgctatagacgctatttaacatgaggggatgcaaaatgacagtcacgttcttaaaagaatgaca |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10062423 |
tttgtttaaattcaactatgcaatagactgtagcactgctatagacgctatttaacatgaggggatgcaaaatgacagccacgttcttaaaagaatgaca |
10062522 |
T |
|
| Q |
208 |
agatcaaattataaccttcaacaagagtaacgatattggagcaaaacatagtttttgtactgtccgaatgcgtacttcacaacaaatcaagagtttttgt |
307 |
Q |
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| T |
10062523 |
agatcgaattataaacttcaacaagagtaacgatattggagcaaaccacagtttttgtactgtccgaatgcgtacttcacaacaaatcaagagtttttgt |
10062622 |
T |
|
| Q |
308 |
gtcaatcaaacgtataaagttgctcccttcctttctggcaaaaccaacgaccaggggtaaaaaactcatcaagcaacaagtgggaagcaccaataaactt |
407 |
Q |
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| T |
10062623 |
gtcaatcaaacgtataaagttgctcccttcctttctggcaaaaccaacgaccaggggtaaaaaactcatcaagcaacaagtgggaagcaccaataaactt |
10062722 |
T |
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| Q |
408 |
ggtttctggataaacgnnnnnnnggtaccaagtaattatcacagttgatagcttactgttctatccctaattacatgaacttgtattgtgttacat |
503 |
Q |
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| T |
10062723 |
ggtttctggataaacgaaaaaaaggtaccaagtaattatcacagttgatagcttactgttctatccctaattacatgaacttgtattgtgttacat |
10062818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 247 - 491
Target Start/End: Original strand, 740128 - 740372
Alignment:
| Q |
247 |
agcaaaacatagtttttgtactgtccgaatgcgtacttcacaacaaatcaagagtttttgtgtcaatcaaacgtataaagttgctcccttcctttctggc |
346 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| || |
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| T |
740128 |
agcaaaacacagtttttgtactgtccgaatgtgtacttcacaacaaatcaagagttttcttgtcattcaaacgtataaagttgctccgttcctttctcgc |
740227 |
T |
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| Q |
347 |
aaaaccaacgaccaggggtaaaaaactcatcaagcaacaagtgggaagcaccaataaacttggtttctggataaacgnnnnnnnggtaccaagtaattat |
446 |
Q |
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| T |
740228 |
aaaaccaacaaccaggggaaacaaactcatcaagcaacacgtgggaagcaccaataaacatggtttctggataaacgaaaaaaaggtaccaagtaattac |
740327 |
T |
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| Q |
447 |
cacagttgatagcttactgttctatccctaattacatgaacttgt |
491 |
Q |
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| T |
740328 |
cacagttgatagcttactgttctatccctaattagatgaacttgt |
740372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 739171 - 739320
Alignment:
| Q |
19 |
aaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacagattttggtaagcttaactctgcctctagtgtgatagcgatttgtttaaat |
118 |
Q |
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| T |
739171 |
aaacaggctgcgacttttctgttttgctgcaatatcagaataaaacacagattttgataagcttaactctgcttctagtgtgatagcaatttgtttaaat |
739270 |
T |
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| Q |
119 |
tcaactatgcaataggctgtagcactgctatagacgctatttaacatgag |
168 |
Q |
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| T |
739271 |
tcaactatgcaataggctatagcgctgttataggcgctatttaacatgag |
739320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 739716 - 739791
Alignment:
| Q |
169 |
gggatgcaaaatgacagtcacgttcttaaaagaatgacaagatcaaattataaccttcaacaagagtaacgatatt |
244 |
Q |
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| T |
739716 |
gggatgcaaaatgacagccacattcttaaaagaatgataagatcaaattataatcttccacaagaataacgatatt |
739791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 3596288 - 3596320
Alignment:
| Q |
101 |
atagcgatttgtttaaattcaactatgcaatag |
133 |
Q |
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| T |
3596288 |
atagcgatttgtttaaattcaactacgcaatag |
3596320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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