View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_32 (Length: 250)
Name: NF19360_low_32
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 27522490 - 27522255
Alignment:
| Q |
12 |
atgaataattaatcaaggctaagattctttattattttccatgacacattttcaaaaataattatagatcaaggagaaggaaaagattgcagctcagcag |
111 |
Q |
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| T |
27522490 |
atgaataattaatcaaggctaagattctttattgttttccatgacacattttcaaaaataattatagatcaaggagaaggaaaagattgcagctcagcag |
27522391 |
T |
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| Q |
112 |
caggcacaatgggagcacccaaaccatcatggagttaatccaaattacttactacagcagcaacttccaactttgaacatggggtgggtaacatttctat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27522390 |
caggcacaatgggagcacccaaaccatcatggagttaatccaaattacttactacagcagcaacttccaactttgaacatggggtgggtaacatttctat |
27522291 |
T |
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| Q |
212 |
aacatatgcattattaattattaaattatgtcacattta |
250 |
Q |
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||| |||||||||||| |||||||||||||||||||| |
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| T |
27522290 |
aacctatgcattatta---attaaattatgtcacattta |
27522255 |
T |
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