View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19360_low_33 (Length: 249)
Name: NF19360_low_33
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 55303374 - 55303558
Alignment:
| Q |
14 |
agaagcaaagggatatgaaaagaatgtgattgttgagttattcaaggaaacatatggtaaggtgatcaatagttcactgccttgtagcccagaaaactgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55303374 |
agaagcaaagggatatgaaaagaatgtgattgttgagttattcaaggaaacatatggtaaggtgatcaatagttcactgccttgtagcccagaaaactgt |
55303473 |
T |
|
| Q |
114 |
caaggtacgcacgcactctaatgctaaagccaatattgttgttttgtatggaccaatcaagtaattaatatgtttaactgtttat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55303474 |
caaggtacgcacgcactctaatgctaaagccaatattgttgttttgtatggaccaatcaagtaattaatatgtttaactgtttat |
55303558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University