View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_4 (Length: 520)
Name: NF19360_low_4
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 10677913 - 10677589
Alignment:
| Q |
16 |
agatgaaaagttatttttatttttcttaaaaccaaattatatttctcgaaattaagttaggagtattcacaaatacgaatagatccactccaaatcaaat |
115 |
Q |
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| T |
10677913 |
agatgaaaagttatttttatttttcttaaaaccaaattatatttcttgaaattaagttaggagtattcacaaatacgaatagattcactccaaatcaaac |
10677814 |
T |
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| Q |
116 |
taaattgatcaagttcgataacaagttagagcaaactctatctaaccagactcagactcgtgaacactcatactttaaaaatctgcatgtgaaaggcata |
215 |
Q |
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| T |
10677813 |
taaattgatcaagttcgataacaagttagagcaaactctatctaaccagactcagactcgtgaacactcatactttaaaaatctgcatgtgaaaggcata |
10677714 |
T |
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| Q |
216 |
tgaagatgcccaaatcttttgactgctaactaatactttttaattgcagctggagatggtggcatgataagaaggagcagcttttttagagaaaagaacc |
315 |
Q |
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| T |
10677713 |
tgaagatgcccaaatcttttgactgctaactaatactttttaattgcagctggagatggtggcatgataagaaggagcagcttttttagagaaaagaagc |
10677614 |
T |
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| Q |
316 |
gatgatgtctatcatgagattgtgt |
340 |
Q |
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| T |
10677613 |
aatgatgtctatcatgagattgtgt |
10677589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 344 - 503
Target Start/End: Complemental strand, 10677559 - 10677400
Alignment:
| Q |
344 |
caagaacttttatatttaccatgatattgcttttgtacaaattttcattttcatattatatctatgcatttctagctttaatttttcttccatgcaacac |
443 |
Q |
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| T |
10677559 |
caagaacttttatatttaccatgatattgcttttgtacaaattttcattttcatattatatctatgcatttctagctttaatttttcttccatgcaacac |
10677460 |
T |
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| Q |
444 |
ttttaagagtaatttatggttcaaatttcttgagttacacaattattcttgagttctctt |
503 |
Q |
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| T |
10677459 |
ttttaagagtaatgtatggttcaaatttcttgagttacacaattattcttgagttctctt |
10677400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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