View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19360_low_5 (Length: 486)

Name: NF19360_low_5
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19360_low_5
NF19360_low_5
[»] chr3 (16 HSPs)
chr3 (254-472)||(19382489-19382707)
chr3 (2-191)||(19382770-19382960)
chr3 (257-472)||(19394745-19394958)
chr3 (257-472)||(18872080-18872289)
chr3 (355-472)||(19465948-19466063)
chr3 (261-424)||(19439803-19439964)
chr3 (118-191)||(19395024-19395097)
chr3 (381-472)||(18166753-18166844)
chr3 (2-68)||(18871938-18872003)
chr3 (112-179)||(19440046-19440113)
chr3 (2-68)||(19395098-19395163)
chr3 (258-352)||(25464809-25464903)
chr3 (118-162)||(18872004-18872048)
chr3 (118-162)||(19466086-19466130)
chr3 (309-412)||(19401418-19401519)
chr3 (444-472)||(16678802-16678830)
[»] chr8 (1 HSPs)
chr8 (258-408)||(8461277-8461424)
[»] chr4 (1 HSPs)
chr4 (267-393)||(2708744-2708868)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 254 - 472
Target Start/End: Complemental strand, 19382707 - 19382489
Alignment:
Q  254 gtattacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaa 353  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19382707 gtattacaatcacatatgatctcatctcatacaattattaattgttgatatcaaaatattggctctatttggtaaactctatccacgatttggataacaa 19382608  T
Q  354 ggcacaaactgcgacatgcataatctcacctgataaaatacgaaacaaataaaatggatgtaagttttgattagaattgcgtaatgaaacaattactcta 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19382607 ggcacaaactgcgacatgcataatctcacctgataaaatacgaaacaaataaaatggatgtaagttttgattagaattgcgtaatgaaacaattactcta 19382508  T
Q  454 tagtttgattaataaaact 472  Q
    |||||||||||||||||||    
T  19382507 tagtttgattaataaaact 19382489  T

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Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 19382960 - 19382770
Alignment:
Q  2 atattggaagcagcaaagtgtttacacaaactcatgttcttaaaccatcctgcataaactaatatgttgatagatnnnnnnn-gtccaaagcacaacatt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  19382960 atattggaagcagcaaagtgtctacacaaactcatgttcttaaaccatcctgcataaactaatatgttgatagataaaaaaaagtccaaagcacaacatt 19382861  T
Q  101 ttaaactaaaattaaggagagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattcactgactattat 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19382860 ttaaactaaaattaaggagagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattcactgactattat 19382770  T

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Target: chr3; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 257 - 472
Target Start/End: Complemental strand, 19394958 - 19394745
Alignment:
Q  257 ttacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggc 356  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||    
T  19394958 ttacaatcacatatgatctcatctcatacaattattaattgttgatatcaaaatatttgctctatttggaaaactctatccacgaattggataacaatgc 19394859  T
Q  357 acaaactgcgacatgcataatctcacctgataaaatacgaaacaaataaaatggatgtaagttttgattagaattgcgtaatgaaacaattactctatag 456  Q
    |||||||| |||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | ||||||||||| |||| |||||    
T  19394858 acaaactgtgacatgcataa--tcacctgataaaatatgaaacaaatgaaatggatgtaagtttttattagaattacataatgaaacaaatactttatag 19394761  T
Q  457 tttgattaataaaact 472  Q
    ||||| | ||||||||    
T  19394760 tttgagtgataaaact 19394745  T

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Target: chr3; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 257 - 472
Target Start/End: Original strand, 18872080 - 18872289
Alignment:
Q  257 ttacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggc 356  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||    
T  18872080 ttacaatcacataagatctcatctcatacaattaataattgttgatatcaaaatattggctcaatttgggaaactctatccacgatttggataacaatgc 18872179  T
Q  357 acaaactgcgacatgcataatctcacctgataaaatacgaaacaaataaaatggatgtaagttttgattagaattgcgtaatgaaacaattactctatag 456  Q
    |||||||| |||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||    ||||||||||| |||||||| |    
T  18872180 acaaactgtgacatgcataa--tcacctgataaaatatgaaacaaatgaaatggatgtaagttttgattagaat----taatgaaacaaatactctatgg 18872273  T
Q  457 tttgattaataaaact 472  Q
    ||||||||||||||||    
T  18872274 tttgattaataaaact 18872289  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 355 - 472
Target Start/End: Complemental strand, 19466063 - 19465948
Alignment:
Q  355 gcacaaactgcgacatgcataatctcacctgataaaatacgaaacaaataaaatggatgtaagttttgattagaattgcgtaatgaaacaattactctat 454  Q
    |||||||||| || ||||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| || || |||||    
T  19466063 gcacaaactgtgaaatgcataatc--acctgataaaatatgaaacaaatgaaatggatgtaagttttgattagaattgcataatgaaagaaatattctat 19465966  T
Q  455 agtttgattaataaaact 472  Q
    ||||||| | ||||||||    
T  19465965 agtttgactgataaaact 19465948  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 424
Target Start/End: Complemental strand, 19439964 - 19439803
Alignment:
Q  261 aatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggcacaa 360  Q
    ||||||||||||||||||||||||||| | |||||  | ||||||| |||||||||||||||| ||||| | |||||||||||| |||||||| ||   |    
T  19439964 aatcacatatgatctcatctcatacaactcttaattatcgatatcacaatattggctctattttgaaaattatatccacgatttcgataacaatgccgga 19439865  T
Q  361 actgcgacatgcataatctcacctgataaaatacgaaacaaataaaatggatgtaagttttgat 424  Q
     |||  ||| ||||||  || ||| |||||||| ||||||||| ||||||||||||||||||||    
T  19439864 tctggcacaagcataa--tcccctaataaaatatgaaacaaatgaaatggatgtaagttttgat 19439803  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 19395097 - 19395024
Alignment:
Q  118 agagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattcactgactattat 191  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19395097 agagagatacatgaggtgtgcactagcccaaagaacaacttacaaaatgaatgtaaccattccctgactattat 19395024  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 381 - 472
Target Start/End: Complemental strand, 18166844 - 18166753
Alignment:
Q  381 acctgataaaatacgaaacaaataaaatggatgtaagttttgattagaattgcgtaatgaaacaattactctatagtttgattaataaaact 472  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||||||| | ||| ||||||| ||||| ||| ||||||||||||||||    
T  18166844 acctgataaaatatgaaacaaatgaaatggatgtaagttttgaatagaattacataaggaaacaaatactcaatattttgattaataaaact 18166753  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 18871938 - 18872003
Alignment:
Q  2 atattggaagcagcaaagtgtttacacaaactcatgttcttaaaccatcctgcataaactaatatgt 68  Q
    ||||||||||||||||||| | ||||||||||| | |||||||||||| ||||||||||||||||||    
T  18871938 atattggaagcagcaaagtttctacacaaactcttattcttaaaccat-ctgcataaactaatatgt 18872003  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 19440113 - 19440046
Alignment:
Q  112 ttaaggagagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattc 179  Q
    |||||||| |||||||||| ||||||| ||||||||||||||| |||||||||  |||| ||||||||    
T  19440113 ttaaggagtgagatacatgtggtgtggacaagcccaaagaacagcttacaaaactaatgcaaccattc 19440046  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 19395163 - 19395098
Alignment:
Q  2 atattggaagcagcaaagtgtttacacaaactcatgttcttaaaccatcctgcataaactaatatgt 68  Q
    ||||||||||||||||||| | || |||||||| | |||||||||||| ||||||||||||||||||    
T  19395163 atattggaagcagcaaagtttctaaacaaactcttattcttaaaccat-ctgcataaactaatatgt 19395098  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 352
Target Start/End: Complemental strand, 25464903 - 25464809
Alignment:
Q  258 tacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataaca 352  Q
    |||||| ||||||||| ||||||||||||| | || || ||| |||| | |||||||||||||||| ||||| | ||||||| ||||| ||||||    
T  25464903 tacaatgacatatgatatcatctcatacaactttttattgtttatattacaatattggctctattttgaaaattatatccaccatttgcataaca 25464809  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 18872004 - 18872048
Alignment:
Q  118 agagagatacatgaggtgtggccaagcccaaagaacaacttacaa 162  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  18872004 agagagatacatgaggtgtggacaatcccaaagaacaacttacaa 18872048  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 19466130 - 19466086
Alignment:
Q  118 agagagatacatgaggtgtggccaagcccaaagaacaacttacaa 162  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  19466130 agagagatacatgaggtgtggacaatcccaaagaacaacttacaa 19466086  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 19401519 - 19401418
Alignment:
Q  309 atattggctctatttggaaaactctatccacgatttggataacaaggcacaaactgcgacatgcataatctcacctgataaaatacgaaacaaataaaat 408  Q
    ||||||||||| ||||||||| | |||| | |||||| ||||||| |||  | || | ||||||||||||  ||||||||||||| ||| |||| |||||    
T  19401519 atattggctctgtttggaaaattatatcaaagatttgcataacaatgcaggatcttccacatgcataatc--acctgataaaatatgaagcaaacaaaat 19401422  T
Q  409 ggat 412  Q
    ||||    
T  19401421 ggat 19401418  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 472
Target Start/End: Complemental strand, 16678830 - 16678802
Alignment:
Q  444 aattactctatagtttgattaataaaact 472  Q
    |||||||||||||||||||||||||||||    
T  16678830 aattactctatagtttgattaataaaact 16678802  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 408
Target Start/End: Complemental strand, 8461424 - 8461277
Alignment:
Q  258 tacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggca 357  Q
    |||||||||| ||||||||||||||||||| | ||||| | |||||||| |||||||||||||||| ||||| | ||||||||| ||  |||| || |||    
T  8461424 tacaatcacaaatgatctcatctcatacaactcttaattgctgatatcacaatattggctctatttagaaaattatatccacgactt--ataaaaatgca 8461327  T
Q  358 caaactgcgacatgcataatctcacctgataaaatacgaaacaaataaaat 408  Q
      | |||| |||||||||||| |||||||||||||||||| |||| |||||    
T  8461326 ggatctgccacatgcataatc-cacctgataaaatacgaagcaaacaaaat 8461277  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 2708744 - 2708868
Alignment:
Q  267 atatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggcacaaactgcg 366  Q
    |||||||||||||| |||||| | |||||  ||||| | | |||||||||||| ||||||||| |  |||||| ||||| ||||||| |||  ||||||     
T  2708744 atatgatctcatcttatacaactcttaattattgatgtgacaatattggctctctttggaaaattacatccacaatttgcataacaatgcaggaactgcc 2708843  T
Q  367 acatgcataatctcacctgataaaata 393  Q
    ||| ||||||   ||||||||||||||    
T  2708844 acacgcataa--ccacctgataaaata 2708868  T

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