View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19360_low_6 (Length: 472)

Name: NF19360_low_6
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19360_low_6
NF19360_low_6
[»] chr7 (12 HSPs)
chr7 (106-429)||(8016135-8016457)
chr7 (203-375)||(8104057-8104229)
chr7 (180-393)||(39986938-39987151)
chr7 (280-365)||(8602736-8602821)
chr7 (299-365)||(1302313-1302379)
chr7 (260-363)||(8572594-8572697)
chr7 (11-61)||(8016076-8016126)
chr7 (197-365)||(8660246-8660420)
chr7 (253-363)||(8582667-8582777)
chr7 (333-363)||(10493069-10493099)
chr7 (280-365)||(8647703-8647788)
chr7 (266-363)||(17261396-17261493)
[»] chr4 (3 HSPs)
chr4 (182-400)||(23586439-23586657)
chr4 (182-400)||(23595272-23595490)
chr4 (333-363)||(35133458-35133488)
[»] chr2 (5 HSPs)
chr2 (284-363)||(12257933-12258012)
chr2 (200-324)||(17716074-17716198)
chr2 (280-363)||(16656615-16656698)
chr2 (200-312)||(17666070-17666182)
chr2 (200-282)||(17621332-17621414)
[»] chr8 (1 HSPs)
chr8 (308-363)||(43745828-43745883)
[»] chr5 (1 HSPs)
chr5 (280-363)||(42554202-42554285)
[»] chr1 (1 HSPs)
chr1 (299-363)||(4677574-4677638)
[»] chr6 (1 HSPs)
chr6 (333-365)||(28911316-28911348)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 106 - 429
Target Start/End: Original strand, 8016135 - 8016457
Alignment:
Q  106 accctaacacaaacacttttctctcttct-cattctttcacaaaaaccaaaccctagcgttcttgaatccatcaacaatggccggaaaaggagaaggacc 204  Q
    |||||||||||||| |||||||||||| | ||||  ||| |  ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  8016135 accctaacacaaactcttttctctcttttacatt--ttctcgtaaaccaaaccctagcgttcttgaattcatcaacaatggccggaaaaggagaaggtcc 8016232  T
Q  205 tgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaaggaaaccgtacaacg 304  Q
    ||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| || |||    
T  8016233 tgcaatcggaatagatctgggaacaacgtactcgtgtgttggagtatggcaacacgatcgtgttgagatcattgctaatgatcaagggaaccgaacgacg 8016332  T
Q  305 ccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcaggtcgcgatgaaccctgttaacaccgttttcggtaagattt 404  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  8016333 ccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcaggttgcgatgaaccctgttaacactgttttcggtgagattt 8016432  T
Q  405 cgattccgaacattcacattattaa 429  Q
    ||||||  ||||||| ||| |||||    
T  8016433 cgattctaaacattcgcataattaa 8016457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 203 - 375
Target Start/End: Complemental strand, 8104229 - 8104057
Alignment:
Q  203 cctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaaggaaaccgtacaa 302  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| | || |    
T  8104229 cctgcaatcggaatagatctgggaacaacgtactcgtgtgttggagtatggcaacacgatcgtgttgagatcattgctaatgatcaagggaacagaacga 8104130  T
Q  303 cgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcaggtcgcgatgaa 375  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8104129 caccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcaggttgcgatgaa 8104057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 180 - 393
Target Start/End: Complemental strand, 39987151 - 39986938
Alignment:
Q  180 caatggccggaaaaggagaaggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgc 279  Q
    ||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| || || || ||||||||||| || |||||||| ||||||||    
T  39987151 caatggccggaaagggagaaggaccagcgatcggaatcgatcttggaaccacatactcatgcgtcggtgtatggcaacatgaccgtgttgaaatcatcgc 39987052  T
Q  280 caatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcaggtcgcgatgaaccct 379  Q
    ||| || ||||| |||||||| ||||||||||| || ||||| || ||    ||  |  | ||||||||||||||||||||||| || || |||||||||    
T  39987051 caacgaccaaggtaaccgtaccacgccgtcttacgtcgctttcaccgactccgagcgtctcatcggtgatgctgctaagaatcaagttgccatgaaccct 39986952  T
Q  380 gttaacaccgtttt 393  Q
     | |||||||||||    
T  39986951 atcaacaccgtttt 39986938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 8602821 - 8602736
Alignment:
Q  280 caatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 365  Q
    |||||||||||||||| | || || || |||| ||||||||||||||||  | |||||||||||||||||||||| || |||||||    
T  8602821 caatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatcagg 8602736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 1302379 - 1302313
Alignment:
Q  299 acaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 365  Q
    ||||| ||||||| ||||||||| || |||  | |||||||||||||||||||||||||||||||||    
T  1302379 acaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaagaatcagg 1302313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 8572697 - 8572594
Alignment:
Q  260 gatcgtgttgagatcatcgccaatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaaga 359  Q
    ||||||||||| |||||   |||||| ||||||||| | ||||| || |||| ||||||||||||| ||  | |||| ||||||||||||||||| || |    
T  8572697 gatcgtgttgaaatcatacacaatgaccaaggaaacagaacaactccctcttgtgttgcttttactaattctcaaagattgatcggtgatgctgccaaaa 8572598  T
Q  360 atca 363  Q
    ||||    
T  8572597 atca 8572594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 8016076 - 8016126
Alignment:
Q  11 aagaacattctagaatctcaaaaactccattatataaagaccttcacaatt 61  Q
    ||||||||||||||||| ||||||||| |||||||||| || |||||||||    
T  8016076 aagaacattctagaatcccaaaaactctattatataaacactttcacaatt 8016126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 365
Target Start/End: Complemental strand, 8660420 - 8660246
Alignment:
Q  197 gaaggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggc------aacacgatcgtgttgagatcatcgccaatgatcaag 290  Q
    ||||||| ||| ||||||||||| || |||||||| || ||||||||||  || ||||      | ||| |||| || |||||||||  ||| || ||||    
T  8660420 gaaggacgtgctattggaatagaccttggaacaacctattcgtgtgttgctgtgtggctggagaatcacaatcgagtcgagatcatctacaacgaccaag 8660321  T
Q  291 gaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 365  Q
    |||||   ||||| || || | ||||||||| |||||   | |||||||||| ||||||||||||||||||||||    
T  8660320 gaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaagaatcagg 8660246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 8582777 - 8582667
Alignment:
Q  253 gcaacacgatcgtgttgagatcatcgccaatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgct 352  Q
    |||| |||||||||| || |||||   ||||||||||||||||   ||||| || |||| ||||||||||||| ||  | |||| ||||| |||||||||    
T  8582777 gcaaaacgatcgtgtggaaatcatacacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgct 8582678  T
Q  353 gctaagaatca 363  Q
    || || |||||    
T  8582677 gccaaaaatca 8582667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 363
Target Start/End: Original strand, 10493069 - 10493099
Alignment:
Q  333 aaaggttgatcggtgatgctgctaagaatca 363  Q
    |||||||||||||||||||||||||||||||    
T  10493069 aaaggttgatcggtgatgctgctaagaatca 10493099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 8647788 - 8647703
Alignment:
Q  280 caatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 365  Q
    |||||||||||||||| | || || || |||| ||||||||| || |||  | |||||||||| |||||||| ||||| |||||||    
T  8647788 caatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcagg 8647703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 17261493 - 17261396
Alignment:
Q  266 gttgagatcatcgccaatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatca 363  Q
    |||||||||||   ||||||||||||||||   |  || || |||| |||||||||| || |   ||||||||||||||||||||| |||||||||||    
T  17261493 gttgagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatca 17261396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 182 - 400
Target Start/End: Original strand, 23586439 - 23586657
Alignment:
Q  182 atggccggaaaaggagaaggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgcca 281  Q
    ||||| |||||||| ||||||||||| |||||||||||| |||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||| || |    
T  23586439 atggctggaaaaggcgaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaa 23586538  T
Q  282 atgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcaggtcgcgatgaaccctgt 381  Q
    ||||||| || ||  | || || || |||||||||||||| |||||||  ||| | ||||||||||||||||||||||||||||| || |||||||||      
T  23586539 atgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctac 23586638  T
Q  382 taacaccgttttcggtaag 400  Q
    |||||| ||||||||||||    
T  23586639 taacactgttttcggtaag 23586657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 182 - 400
Target Start/End: Original strand, 23595272 - 23595490
Alignment:
Q  182 atggccggaaaaggagaaggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgcca 281  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||| || |    
T  23595272 atggctggaaaaggagaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaa 23595371  T
Q  282 atgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatcaggtcgcgatgaaccctgt 381  Q
    ||||||| || ||  | || || || |||||||||||||| |||||||  ||| | |||||||||||||| || |||||||| || || |||||||||      
T  23595372 atgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgcagccaagaatcaagttgctatgaaccctac 23595471  T
Q  382 taacaccgttttcggtaag 400  Q
     ||||| ||||||||||||    
T  23595472 caacactgttttcggtaag 23595490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 363
Target Start/End: Complemental strand, 35133488 - 35133458
Alignment:
Q  333 aaaggttgatcggtgatgctgctaagaatca 363  Q
    |||||||||||||||||||||||||||||||    
T  35133488 aaaggttgatcggtgatgctgctaagaatca 35133458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 363
Target Start/End: Original strand, 12257933 - 12258012
Alignment:
Q  284 gatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatca 363  Q
    |||||||||||| | |||||||| |||| ||||||||||||| |   | |||||||||| ||||||||||||||||||||    
T  12257933 gatcaaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatca 12258012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 17716074 - 17716198
Alignment:
Q  200 ggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaaggaaaccgta 299  Q
    ||||| ||||| || || ||||||||||| |||||||| || || || ||||||||||| || |||||||| ||||||||||| || ||||| ||| | |    
T  17716074 ggaccagcgatcgggatcgatctgggaaccacatactcatgcgtaggtgtatggcaacatgaccgtgttgaaatcatcgccaacgaccaaggtaacagaa 17716173  T
Q  300 caacgccgtcttatgttgcttttac 324  Q
    | || || ||||| ||||| |||||    
T  17716174 ctacaccatcttacgttgcctttac 17716198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 16656615 - 16656698
Alignment:
Q  280 caatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatca 363  Q
    |||||| || |||||| | ||||| || |||| ||||||||| ||| ||  | |||||||||||||||||||||||||||||||    
T  16656615 caatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaagaatca 16656698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 17666070 - 17666182
Alignment:
Q  200 ggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaatgatcaaggaaaccgta 299  Q
    ||||| |||||||| || ||||| ||||| |||||||| || || || |||||| |||| || |||||||| ||||||||||| || ||||| ||| | |    
T  17666070 ggaccagcgattgggatcgatctcggaaccacatactcatgcgtcggtgtatggaaacatgaccgtgttgaaatcatcgccaacgaccaaggtaacagaa 17666169  T
Q  300 caacgccgtctta 312  Q
    | || ||||||||    
T  17666170 ccacaccgtctta 17666182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 17621332 - 17621414
Alignment:
Q  200 ggacctgcgattggaatagatctgggaacaacatactcgtgtgttggagtatggcaacacgatcgtgttgagatcatcgccaa 282  Q
    ||||| |||||||| || ||||| ||||| |||||||| || || || ||||| ||||| || |||||||| |||||||||||    
T  17621332 ggaccagcgattgggatcgatctcggaaccacatactcatgcgtaggtgtatgtcaacatgaccgtgttgaaatcatcgccaa 17621414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 43745883 - 43745828
Alignment:
Q  308 tcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatca 363  Q
    |||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||||    
T  43745883 tcttttgttgcttttactgatcatgaaaggttgataggtgacgctgctaagaatca 43745828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 42554202 - 42554285
Alignment:
Q  280 caatgatcaaggaaaccgtacaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatca 363  Q
    |||||||||||| |||   ||||| || |||| ||||||||||||| ||  |||||||||||| ||||||||||||||| ||||    
T  42554202 caatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaaggatca 42554285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 4677574 - 4677638
Alignment:
Q  299 acaacgccgtcttatgttgcttttactgatagtgaaaggttgatcggtgatgctgctaagaatca 363  Q
    ||||| || |||| ||||||||||||||||  | |||||||||| ||| ||||||||||||||||    
T  4677574 acaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaagaatca 4677638  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 28911348 - 28911316
Alignment:
Q  333 aaaggttgatcggtgatgctgctaagaatcagg 365  Q
    |||||||||| ||||||||||||||||||||||    
T  28911348 aaaggttgattggtgatgctgctaagaatcagg 28911316  T

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