View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_7 (Length: 439)
Name: NF19360_low_7
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 110 - 420
Target Start/End: Original strand, 38706006 - 38706313
Alignment:
| Q |
110 |
ttcaacctgcaaaaatagacaacaacaaaattctattgtatttgtatatcctaaaccaattgtttaaaatttttaaatagaaaaggatggaaagtgaatg |
209 |
Q |
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| T |
38706006 |
ttcaacctgcaaaaatagacaa---caaaattctattgtatttgtatatcctaaaccaattgtttaaaaattttaaatagaaaaggatggaaagtgaatg |
38706102 |
T |
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| Q |
210 |
ggtataccagaatatgggcatcgtttaattgttgatttgtgattagcttataaatttccttgcacatagcatcagcacaattggtctttgtttcaagcag |
309 |
Q |
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| T |
38706103 |
ggtataccagaatatgggcatcgtttaattgctgatttgtgattagcttataaatttccttgcacatagcatcatcacaatcggtctttgtttcaagcag |
38706202 |
T |
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| Q |
310 |
tgatcgttcatctacaatcaacttttccagcaacctttcgctgaaatataatatttatagacaaataatcacttttcaacacaaccattttcttgtttaa |
409 |
Q |
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| T |
38706203 |
tgatcgttcatctacaatcaacttttccagcaacctttcgctgaaatataatatttatagacaaataatcagttttcaacacaaccattttcttgttcaa |
38706302 |
T |
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| Q |
410 |
aaggtcaaata |
420 |
Q |
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| T |
38706303 |
aaggtcaaata |
38706313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38701853 - 38701964
Alignment:
| Q |
1 |
ttaaaatataccattgggattcaatgagataaaggtaattagcaactcgatcacataagtattcaatatactctagaacaacaatcaagtttctctgatc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38701853 |
ttaaaatataccattgggatccaatgagataaaggtgattagcaactcgatcacaaaagtattcaatatactctagaacagcaatcaagtttctctgatc |
38701952 |
T |
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| Q |
101 |
cataagacattc |
112 |
Q |
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| T |
38701953 |
cataagacattc |
38701964 |
T |
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