View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19360_low_9 (Length: 418)
Name: NF19360_low_9
Description: NF19360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19360_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 211 - 400
Target Start/End: Complemental strand, 9439512 - 9439323
Alignment:
| Q |
211 |
ctccgagggaatatctggtctaaaattcttttcaggcgaaccttcatcaaattctcattgtatatatctcattcatggctctatcagcatgtcccaaaca |
310 |
Q |
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| T |
9439512 |
ctccgagggaatatctggtctaaaattcttttcaggcgaaccttcatcaaattctcattgtatagatctcattcatggctctatcagcatgtcccaaaca |
9439413 |
T |
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| Q |
311 |
agacttattttgtctgcaaggttgaaattggcaagatatagtgttcccatgattcttcttgttcggggagacattcctagtgaacctttc |
400 |
Q |
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| T |
9439412 |
agacttattttgtctgcaaggttgaaattggcaagatatagtgttcccatgattcttcttgttcggggagacattcctagtgaacctttc |
9439323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 9439667 - 9439510
Alignment:
| Q |
15 |
cataggagtgagaaagtatttggatagtaagaaaaaggtagaagaaaaccagaggttactctgcagagtcagatacaacattttctatccttaaatccat |
114 |
Q |
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| T |
9439667 |
cataggagtgacaaagtatttggatagtaagcaaaaggtagaagaaaaccagaggttactctgcagagtcagatacaacattttctatccttaaatccat |
9439568 |
T |
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| Q |
115 |
taggatagatcctcttccactctcccactttcttcttataatttttgcgaattccctc |
172 |
Q |
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| T |
9439567 |
taggatagatcctcttccactctcccactttcttcatataattcttgcgaattccctc |
9439510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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