View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_high_10 (Length: 483)
Name: NF19361_high_10
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_high_10 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 151 - 483
Target Start/End: Original strand, 11847983 - 11848315
Alignment:
| Q |
151 |
tgagtttcggagtttcctatgttcttcaccttgttttactgttttttatgatgtttgttgctgcatggtctcaagatgatgttgtcatgcaaaagctgaa |
250 |
Q |
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| T |
11847983 |
tgagttttggagtttcctatgttcttcaccttgttttactgttttttatgatgtttattgctgcatggtctcaagatgacgttgttatgcaaaagctgaa |
11848082 |
T |
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| Q |
251 |
aagttctataacatcatcaagcaatgatcttgattggtcagacaaagattgttgcaaatggaagggagtttcatgtagcggaacgacggtcactgaaatt |
350 |
Q |
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| T |
11848083 |
aagttctataacatcatcaagcaatgatcttgattggtcagacaaagattgttgcaaatggaagggagtttcatgcagcggaacgacggtcactgaaatt |
11848182 |
T |
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| Q |
351 |
aatttaggacaactcaatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggag |
450 |
Q |
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| T |
11848183 |
aatttaggacaactcaatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggag |
11848282 |
T |
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| Q |
451 |
gttttccatacatgccaaattcacttcagaact |
483 |
Q |
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| T |
11848283 |
gttttccatacatgccaaattcacttcagaact |
11848315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 154 - 479
Target Start/End: Complemental strand, 11859164 - 11858839
Alignment:
| Q |
154 |
gtttcggagtttcctatgttcttcaccttgttttactgttttttatgatgtttgttgctgcatggtctcaagatgatgttgtcatgcaaaagctgaaaag |
253 |
Q |
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| T |
11859164 |
gtttcagagtttcctacgttcttcaccttgttgtgttgttttctatgatgtttgtttctgcatggtctcaagatgatgttgttatgcaaaagctgaaaag |
11859065 |
T |
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| Q |
254 |
ttctataacatcatcaagcaatgatcttgattggtcagacaaagattgttgcaaatggaagggagtttcatgtagcggaacgacggtcactgaaattaat |
353 |
Q |
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| T |
11859064 |
ttctataaaatcatcaagcaatgatcttgattggtcagactcagattttcgcaaatggaatcgtgttcagattaatggaaacacagtcactgcaattcaa |
11858965 |
T |
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| Q |
354 |
ttaggacaactcaatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggaggtt |
453 |
Q |
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| T |
11858964 |
attgcaggtctgaatattcaaggttctttaccaaaagaattggtgcaactcactcagttaaatcgttttgagtgcaatggaaacgctttatctggtgatt |
11858865 |
T |
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| Q |
454 |
ttccatacatgccaaattcacttcag |
479 |
Q |
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| T |
11858864 |
ttccttacatgccaagttcacttcag |
11858839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 173 - 479
Target Start/End: Original strand, 11834619 - 11834925
Alignment:
| Q |
173 |
tcttcaccttgttttactgttttttatgatgtttgttgctgcatggtctcaagatgatgttgtcatgcaaaagctgaaaagttctataacatcatcaagc |
272 |
Q |
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| T |
11834619 |
tcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatcatcaagc |
11834718 |
T |
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| Q |
273 |
aatgatcttgattggtcagacaaagattgttgcaaatggaagggagtttcatgtagcggaacgacggtcactgaaattaatttaggacaactcaatattc |
372 |
Q |
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| T |
11834719 |
agtaatcttgattggtcaaactcagattattgcaaatgggagaaagttacctgtaatggaaatcgtgtcactgcaattcaaattgcagatacaaacattc |
11834818 |
T |
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| Q |
373 |
aaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttt-tctggaggttttccatacatgccaaatt |
471 |
Q |
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| T |
11834819 |
aaggttctttaccaaaagaattgatgcaactcactgagttaactcggtttgaatgcaatggaaa-cagtttatctggtgattttccttacatgccaattt |
11834917 |
T |
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| Q |
472 |
cacttcag |
479 |
Q |
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| T |
11834918 |
cacttcag |
11834925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 11847901 - 11847944
Alignment:
| Q |
65 |
cttcttattaaacccttccctcaaaactcattttcatcaacaac |
108 |
Q |
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| T |
11847901 |
cttcttattaaacccttccctcaaaactcatttccatcaacaac |
11847944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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