View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19361_high_15 (Length: 415)

Name: NF19361_high_15
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19361_high_15
NF19361_high_15
[»] chr6 (43 HSPs)
chr6 (1-47)||(26597268-26597314)
chr6 (1-42)||(383603-383644)
chr6 (1-42)||(24914336-24914377)
chr6 (1-45)||(10118611-10118655)
chr6 (1-45)||(28034008-28034052)
chr6 (1-47)||(2157546-2157592)
chr6 (1-47)||(11213319-11213365)
chr6 (1-43)||(22341957-22341999)
chr6 (1-42)||(2157660-2157701)
chr6 (1-42)||(3750197-3750238)
chr6 (1-42)||(12291048-12291089)
chr6 (1-42)||(12349811-12349852)
chr6 (1-42)||(14897043-14897084)
chr6 (1-42)||(25371107-25371148)
chr6 (1-42)||(26597161-26597202)
chr6 (1-42)||(34246230-34246271)
chr6 (1-37)||(12290946-12290982)
chr6 (1-44)||(10731576-10731619)
chr6 (1-39)||(10118721-10118759)
chr6 (1-47)||(32786219-32786265)
chr6 (1-42)||(2943259-2943300)
chr6 (1-42)||(3750304-3750345)
chr6 (1-42)||(10644260-10644301)
chr6 (1-42)||(10731469-10731510)
chr6 (1-42)||(11989245-11989286)
chr6 (1-42)||(28034118-28034159)
chr6 (5-42)||(32164964-32165001)
chr6 (1-42)||(32710068-32710109)
chr6 (2-42)||(25371000-25371040)
chr6 (1-45)||(28648508-28648552)
chr6 (1-37)||(34246134-34246170)
chr6 (1-44)||(15090996-15091039)
chr6 (1-43)||(11989141-11989183)
chr6 (1-42)||(235696-235737)
chr6 (1-42)||(2943162-2943203)
chr6 (1-42)||(9908132-9908173)
chr6 (1-42)||(12349918-12349959)
chr6 (1-42)||(21478549-21478590)
chr6 (1-42)||(32364119-32364160)
chr6 (2-38)||(14897151-14897187)
chr6 (1-44)||(30507102-30507146)
chr6 (2-42)||(31759428-31759468)
chr6 (2-42)||(33169286-33169326)
[»] chr7 (50 HSPs)
chr7 (1-45)||(10300924-10300968)
chr7 (1-44)||(2850970-2851013)
chr7 (1-42)||(6390222-6390263)
chr7 (1-42)||(25196568-25196609)
chr7 (1-42)||(27878838-27878879)
chr7 (1-42)||(27878906-27878947)
chr7 (1-42)||(32408195-32408236)
chr7 (1-45)||(16810916-16810960)
chr7 (3-42)||(20557687-20557726)
chr7 (2-45)||(27942429-27942472)
chr7 (1-43)||(2927289-2927331)
chr7 (5-43)||(34907772-34907810)
chr7 (1-42)||(2851079-2851120)
chr7 (1-42)||(2927182-2927223)
chr7 (1-42)||(5212146-5212187)
chr7 (1-42)||(10300817-10300858)
chr7 (1-46)||(24043182-24043227)
chr7 (1-42)||(27940848-27940889)
chr7 (1-42)||(28003281-28003322)
chr7 (1-42)||(34907661-34907702)
chr7 (1-42)||(48338932-48338973)
chr7 (1-41)||(23361011-23361051)
chr7 (2-34)||(42691877-42691909)
chr7 (1-41)||(43067021-43067061)
chr7 (1-45)||(46658835-46658879)
chr7 (1-47)||(6798628-6798674)
chr7 (1-51)||(23735986-23736036)
chr7 (1-43)||(24166219-24166261)
chr7 (1-47)||(25486707-25486753)
chr7 (1-42)||(4187988-4188029)
chr7 (1-42)||(7345001-7345042)
chr7 (1-42)||(14206433-14206474)
chr7 (1-42)||(14215123-14215164)
chr7 (1-42)||(18941330-18941371)
chr7 (1-42)||(24043075-24043116)
chr7 (2-43)||(24166258-24166299)
chr7 (1-42)||(25099639-25099680)
chr7 (1-42)||(25486819-25486860)
chr7 (1-42)||(28003174-28003215)
chr7 (2-43)||(28324715-28324756)
chr7 (1-42)||(30005979-30006020)
chr7 (1-42)||(34000945-34000986)
chr7 (1-42)||(35160745-35160786)
chr7 (1-42)||(35160852-35160893)
chr7 (1-42)||(37066178-37066219)
chr7 (1-42)||(37066285-37066326)
chr7 (1-42)||(39098291-39098332)
chr7 (1-42)||(48339070-48339111)
chr7 (1-33)||(16810840-16810872)
chr7 (13-45)||(30352230-30352262)
[»] chr1 (90 HSPs)
chr1 (2-45)||(11994853-11994896)
chr1 (1-44)||(31414859-31414902)
chr1 (1-43)||(39151719-39151761)
chr1 (1-42)||(15998314-15998355)
chr1 (1-42)||(34662401-34662442)
chr1 (1-45)||(15998204-15998248)
chr1 (1-45)||(24286868-24286912)
chr1 (1-43)||(31481860-31481902)
chr1 (1-43)||(31852055-31852097)
chr1 (1-43)||(39151809-39151851)
chr1 (1-42)||(435202-435243)
chr1 (1-42)||(9135621-9135662)
chr1 (1-42)||(11994960-11995001)
chr1 (1-42)||(13911381-13911422)
chr1 (1-42)||(24286761-24286802)
chr1 (1-42)||(26040483-26040524)
chr1 (1-42)||(31481968-31482009)
chr1 (1-42)||(34755001-34755042)
chr1 (1-42)||(35838714-35838755)
chr1 (1-42)||(35838821-35838862)
chr1 (1-42)||(38149360-38149401)
chr1 (1-42)||(41649635-41649676)
chr1 (1-42)||(42761229-42761270)
chr1 (1-42)||(44371215-44371256)
chr1 (1-45)||(6669502-6669546)
chr1 (2-42)||(12568432-12568472)
chr1 (1-45)||(42468848-42468892)
chr1 (2-42)||(43147539-43147579)
chr1 (3-42)||(41649527-41649566)
chr1 (1-43)||(16426903-16426945)
chr1 (1-47)||(22954875-22954921)
chr1 (1-35)||(30785666-30785700)
chr1 (1-43)||(40094431-40094473)
chr1 (1-35)||(45925247-45925281)
chr1 (1-43)||(46518048-46518090)
chr1 (1-43)||(47912567-47912609)
chr1 (1-35)||(51373882-51373916)
chr1 (1-42)||(435309-435350)
chr1 (1-42)||(1344471-1344512)
chr1 (1-42)||(4682933-4682974)
chr1 (1-42)||(5852684-5852725)
chr1 (1-42)||(6763437-6763478)
chr1 (1-42)||(16661656-16661697)
chr1 (1-42)||(17012984-17013025)
chr1 (1-42)||(18023716-18023757)
chr1 (1-42)||(26040376-26040417)
chr1 (1-42)||(29673800-29673841)
chr1 (1-42)||(30785556-30785597)
chr1 (5-42)||(31919836-31919873)
chr1 (1-42)||(31919943-31919984)
chr1 (1-42)||(33324063-33324104)
chr1 (1-42)||(34062046-34062087)
chr1 (1-42)||(34755090-34755131)
chr1 (2-35)||(35161324-35161357)
chr1 (1-42)||(42468946-42468987)
chr1 (1-42)||(42914639-42914680)
chr1 (1-42)||(45242845-45242886)
chr1 (1-42)||(45925347-45925388)
chr1 (1-42)||(49980613-49980654)
chr1 (1-42)||(49980697-49980738)
chr1 (2-42)||(15311468-15311508)
chr1 (2-42)||(16661709-16661749)
chr1 (2-42)||(26059223-26059263)
chr1 (1-45)||(31327560-31327604)
chr1 (1-45)||(33324148-33324192)
chr1 (2-42)||(38149468-38149508)
chr1 (2-42)||(45749100-45749140)
chr1 (1-44)||(39181043-39181086)
chr1 (1-35)||(7151642-7151676)
chr1 (1-43)||(7230004-7230046)
chr1 (5-35)||(31327674-31327704)
chr1 (1-47)||(39181154-39181200)
chr1 (1-35)||(44371285-44371319)
chr1 (1-43)||(47912675-47912717)
chr1 (1-42)||(12568540-12568580)
chr1 (1-42)||(13911282-13911323)
chr1 (1-42)||(17988307-17988348)
chr1 (1-42)||(18023609-18023650)
chr1 (1-42)||(24023361-24023402)
chr1 (1-42)||(24023468-24023509)
chr1 (1-42)||(26660640-26660681)
chr1 (1-42)||(27146127-27146168)
chr1 (1-42)||(34120910-34120951)
chr1 (1-42)||(39422059-39422100)
chr1 (1-42)||(42140433-42140474)
chr1 (1-42)||(48605173-48605214)
chr1 (1-42)||(49363487-49363528)
chr1 (2-42)||(34121022-34121062)
chr1 (2-42)||(42761337-42761377)
chr1 (2-42)||(49188310-49188349)
[»] scaffold0036 (2 HSPs)
scaffold0036 (1-43)||(36405-36447)
scaffold0036 (1-42)||(36513-36554)
[»] chr5 (54 HSPs)
chr5 (1-43)||(8618392-8618434)
chr5 (1-42)||(5226015-5226056)
chr5 (1-42)||(6168675-6168716)
chr5 (1-42)||(16067176-16067217)
chr5 (1-45)||(21369266-21369310)
chr5 (1-44)||(26395256-26395299)
chr5 (1-43)||(36917225-36917267)
chr5 (1-42)||(4162799-4162840)
chr5 (1-42)||(12891391-12891432)
chr5 (1-42)||(14550135-14550176)
chr5 (1-42)||(18003853-18003894)
chr5 (3-43)||(16056740-16056780)
chr5 (1-45)||(19784527-19784571)
chr5 (1-43)||(16067068-16067110)
chr5 (1-43)||(21369376-21369418)
chr5 (1-43)||(34186350-34186392)
chr5 (1-42)||(6168782-6168823)
chr5 (1-42)||(8618500-8618541)
chr5 (1-42)||(12891284-12891325)
chr5 (1-42)||(14274237-14274278)
chr5 (1-42)||(19784626-19784667)
chr5 (1-42)||(22474041-22474082)
chr5 (1-42)||(22635416-22635457)
chr5 (1-42)||(25600573-25600614)
chr5 (1-42)||(25713868-25713909)
chr5 (1-42)||(25713964-25714005)
chr5 (1-42)||(26168291-26168332)
chr5 (1-42)||(28907209-28907250)
chr5 (1-42)||(28943604-28943645)
chr5 (1-42)||(33696758-33696799)
chr5 (1-42)||(36917163-36917204)
chr5 (2-42)||(28907262-28907302)
chr5 (2-42)||(28943657-28943697)
chr5 (2-42)||(36337838-36337878)
chr5 (1-37)||(40680264-40680300)
chr5 (1-44)||(34733360-34733403)
chr5 (1-31)||(5226122-5226152)
chr5 (1-35)||(26395169-26395203)
chr5 (1-42)||(8222046-8222087)
chr5 (1-42)||(8694479-8694520)
chr5 (1-42)||(8694586-8694627)
chr5 (1-42)||(15966059-15966100)
chr5 (1-42)||(25600655-25600696)
chr5 (1-42)||(29255754-29255795)
chr5 (1-42)||(34399561-34399602)
chr5 (1-42)||(35245587-35245628)
chr5 (1-42)||(35245711-35245752)
chr5 (2-43)||(38283378-38283419)
chr5 (1-42)||(39126117-39126158)
chr5 (1-42)||(39148561-39148602)
chr5 (1-42)||(39603007-39603048)
chr5 (1-42)||(43340411-43340452)
chr5 (1-45)||(11380289-11380333)
chr5 (2-42)||(13906985-13907025)
[»] chr4 (66 HSPs)
chr4 (1-43)||(45861108-45861150)
chr4 (1-43)||(54677345-54677387)
chr4 (1-46)||(1945357-1945402)
chr4 (1-42)||(2994717-2994758)
chr4 (1-42)||(45861001-45861042)
chr4 (1-42)||(47628384-47628425)
chr4 (1-42)||(54927208-54927249)
chr4 (1-43)||(35207542-35207584)
chr4 (1-43)||(48796278-48796320)
chr4 (1-42)||(171124-171165)
chr4 (1-42)||(2994824-2994865)
chr4 (1-42)||(7695232-7695273)
chr4 (1-42)||(9011848-9011889)
chr4 (1-42)||(35207435-35207476)
chr4 (1-42)||(39466700-39466741)
chr4 (2-42)||(7695125-7695165)
chr4 (2-42)||(31860755-31860795)
chr4 (2-42)||(36235674-36235714)
chr4 (1-44)||(36235781-36235824)
chr4 (1-43)||(18592448-18592490)
chr4 (1-35)||(31860654-31860688)
chr4 (1-47)||(31914431-31914477)
chr4 (1-43)||(42545982-42546024)
chr4 (1-43)||(42911718-42911760)
chr4 (4-42)||(45070831-45070869)
chr4 (1-39)||(47628280-47628318)
chr4 (1-43)||(54927100-54927142)
chr4 (1-42)||(171231-171272)
chr4 (1-42)||(15133823-15133864)
chr4 (1-42)||(20792077-20792118)
chr4 (1-42)||(25856113-25856154)
chr4 (1-42)||(31808318-31808359)
chr4 (1-42)||(34166108-34166149)
chr4 (1-42)||(38675242-38675283)
chr4 (1-42)||(39466806-39466847)
chr4 (1-42)||(48042694-48042735)
chr4 (1-42)||(51545489-51545530)
chr4 (1-42)||(51883119-51883160)
chr4 (1-45)||(18592338-18592382)
chr4 (2-42)||(35967485-35967525)
chr4 (1-44)||(12721749-12721792)
chr4 (1-44)||(48079619-48079662)
chr4 (2-45)||(48088099-48088142)
chr4 (1-42)||(12721641-12721682)
chr4 (1-42)||(13743961-13744002)
chr4 (2-35)||(15641226-15641259)
chr4 (1-42)||(17659568-17659609)
chr4 (1-42)||(24156135-24156176)
chr4 (1-42)||(24529569-24529610)
chr4 (9-42)||(26651572-26651605)
chr4 (1-42)||(30051446-30051487)
chr4 (1-42)||(43635832-43635873)
chr4 (1-42)||(48079512-48079553)
chr4 (1-42)||(48796172-48796213)
chr4 (1-42)||(50038446-50038487)
chr4 (1-42)||(50045668-50045709)
chr4 (1-42)||(51126101-51126142)
chr4 (1-42)||(51126208-51126249)
chr4 (1-42)||(53508496-53508537)
chr4 (1-42)||(54675372-54675413)
chr4 (1-42)||(56420534-56420575)
chr4 (2-42)||(9011742-9011781)
chr4 (1-45)||(17659458-17659502)
chr4 (1-33)||(51545390-51545422)
chr4 (2-42)||(51975228-51975268)
chr4 (2-42)||(53551699-53551739)
[»] chr2 (55 HSPs)
chr2 (1-43)||(18649616-18649658)
chr2 (1-42)||(6048065-6048106)
chr2 (1-42)||(21208888-21208929)
chr2 (1-42)||(33618300-33618341)
chr2 (2-42)||(7354766-7354806)
chr2 (1-44)||(18649699-18649742)
chr2 (1-48)||(32749929-32749976)
chr2 (1-43)||(44402079-44402121)
chr2 (1-42)||(7728429-7728470)
chr2 (1-42)||(18468937-18468978)
chr2 (1-42)||(18469044-18469085)
chr2 (1-42)||(21208995-21209036)
chr2 (1-42)||(27692705-27692746)
chr2 (1-42)||(44402187-44402228)
chr2 (2-42)||(38962437-38962477)
chr2 (1-45)||(40340572-40340616)
chr2 (2-41)||(42263012-42263051)
chr2 (1-35)||(3094924-3094958)
chr2 (1-39)||(6047918-6047956)
chr2 (1-39)||(19908504-19908542)
chr2 (1-43)||(22352438-22352480)
chr2 (1-43)||(40846567-40846609)
chr2 (1-43)||(44949337-44949379)
chr2 (1-42)||(3095024-3095065)
chr2 (1-42)||(7728536-7728577)
chr2 (1-42)||(15080941-15080982)
chr2 (1-42)||(24971201-24971242)
chr2 (1-42)||(26567632-26567673)
chr2 (1-42)||(27692598-27692639)
chr2 (1-42)||(33618193-33618234)
chr2 (1-42)||(40340465-40340506)
chr2 (1-42)||(40669066-40669107)
chr2 (2-42)||(3373069-3373109)
chr2 (1-36)||(19908608-19908643)
chr2 (1-40)||(22352546-22352585)
chr2 (9-43)||(14394892-14394926)
chr2 (1-43)||(25899353-25899395)
chr2 (1-35)||(42792669-42792703)
chr2 (1-47)||(43514859-43514905)
chr2 (9-42)||(4032576-4032609)
chr2 (1-42)||(4898161-4898202)
chr2 (1-42)||(4945555-4945596)
chr2 (1-42)||(9157970-9158011)
chr2 (1-42)||(24971308-24971349)
chr2 (1-42)||(25668514-25668555)
chr2 (1-42)||(26567739-26567780)
chr2 (1-42)||(29573810-29573851)
chr2 (1-42)||(30202587-30202628)
chr2 (1-42)||(34438848-34438889)
chr2 (1-42)||(35607411-35607452)
chr2 (1-42)||(36396851-36396892)
chr2 (1-42)||(37486102-37486143)
chr2 (1-42)||(42792757-42792798)
chr2 (2-42)||(19267936-19267976)
chr2 (2-42)||(30905228-30905268)
[»] chr8 (54 HSPs)
chr8 (1-42)||(4786698-4786739)
chr8 (1-42)||(5526600-5526641)
chr8 (1-42)||(38815799-38815840)
chr8 (1-42)||(38815906-38815947)
chr8 (1-42)||(45145598-45145639)
chr8 (3-42)||(19163424-19163463)
chr8 (1-43)||(4786763-4786805)
chr8 (1-43)||(7011895-7011937)
chr8 (1-42)||(8769637-8769678)
chr8 (1-42)||(11295915-11295956)
chr8 (1-42)||(29007515-29007556)
chr8 (1-50)||(30245607-30245656)
chr8 (1-42)||(40305008-40305049)
chr8 (1-42)||(40739594-40739635)
chr8 (2-42)||(33472981-33473021)
chr8 (1-44)||(32480299-32480342)
chr8 (1-43)||(1256193-1256235)
chr8 (1-39)||(18126054-18126092)
chr8 (1-39)||(27184317-27184355)
chr8 (1-35)||(32016877-32016911)
chr8 (1-43)||(42666220-42666262)
chr8 (1-43)||(45441097-45441139)
chr8 (1-42)||(5526491-5526532)
chr8 (1-42)||(27184210-27184251)
chr8 (1-42)||(28435408-28435449)
chr8 (1-42)||(34194556-34194597)
chr8 (1-42)||(34194663-34194704)
chr8 (1-42)||(35063563-35063604)
chr8 (1-42)||(36315027-36315068)
chr8 (1-42)||(37922915-37922956)
chr8 (12-44)||(7011786-7011818)
chr8 (1-41)||(33570611-33570651)
chr8 (1-36)||(8769744-8769779)
chr8 (1-36)||(12955823-12955858)
chr8 (1-44)||(45145705-45145748)
chr8 (1-47)||(8568923-8568969)
chr8 (1-43)||(32016769-32016811)
chr8 (3-45)||(35063454-35063496)
chr8 (1-43)||(35447779-35447821)
chr8 (2-44)||(36308508-36308550)
chr8 (1-35)||(36308617-36308651)
chr8 (1-47)||(42631770-42631816)
chr8 (1-42)||(13832469-13832510)
chr8 (1-42)||(13832576-13832617)
chr8 (1-42)||(17911359-17911400)
chr8 (3-32)||(36314963-36314992)
chr8 (1-42)||(38883942-38883983)
chr8 (1-42)||(39655413-39655454)
chr8 (1-42)||(40443627-40443668)
chr8 (1-42)||(42666113-42666154)
chr8 (1-41)||(15754432-15754472)
chr8 (2-42)||(35447888-35447928)
chr8 (2-42)||(40802199-40802239)
chr8 (1-49)||(44838763-44838811)
[»] chr3 (61 HSPs)
chr3 (1-42)||(48908656-48908697)
chr3 (1-45)||(39333393-39333437)
chr3 (1-45)||(48895493-48895537)
chr3 (1-47)||(378791-378837)
chr3 (1-43)||(42957937-42957979)
chr3 (1-42)||(13927391-13927432)
chr3 (1-42)||(16607457-16607498)
chr3 (1-42)||(20547861-20547902)
chr3 (1-42)||(38082510-38082551)
chr3 (1-42)||(38082617-38082658)
chr3 (1-42)||(39148792-39148833)
chr3 (1-42)||(44435277-44435318)
chr3 (2-43)||(44687895-44687936)
chr3 (1-42)||(48895619-48895660)
chr3 (1-42)||(48909137-48909178)
chr3 (2-42)||(378711-378751)
chr3 (1-45)||(11582742-11582786)
chr3 (2-42)||(20547789-20547829)
chr3 (2-42)||(35455559-35455599)
chr3 (1-47)||(8126121-8126167)
chr3 (1-43)||(39333285-39333327)
chr3 (1-42)||(9019008-9019048)
chr3 (1-42)||(13927498-13927539)
chr3 (2-43)||(28791747-28791788)
chr3 (1-42)||(33639017-33639058)
chr3 (1-42)||(34205559-34205600)
chr3 (1-42)||(34413224-34413265)
chr3 (1-42)||(39148685-39148726)
chr3 (1-42)||(40326541-40326582)
chr3 (1-42)||(42957830-42957871)
chr3 (2-42)||(1126504-1126544)
chr3 (1-45)||(4236573-4236617)
chr3 (1-41)||(42605991-42606031)
chr3 (1-43)||(4979710-4979752)
chr3 (1-47)||(17004949-17004995)
chr3 (1-39)||(28791675-28791713)
chr3 (1-43)||(32827423-32827465)
chr3 (1-31)||(35455666-35455696)
chr3 (1-47)||(53718000-53718046)
chr3 (1-42)||(7672689-7672730)
chr3 (1-42)||(7933621-7933662)
chr3 (1-42)||(12569205-12569246)
chr3 (1-42)||(13545669-13545710)
chr3 (1-42)||(17940184-17940225)
chr3 (1-42)||(17940282-17940323)
chr3 (1-42)||(21831462-21831503)
chr3 (1-42)||(26770824-26770865)
chr3 (1-42)||(29076628-29076669)
chr3 (1-42)||(32814731-32814772)
chr3 (1-42)||(36934477-36934518)
chr3 (1-42)||(43556865-43556906)
chr3 (1-42)||(44544154-44544195)
chr3 (2-43)||(50623041-50623082)
chr3 (1-42)||(50623139-50623180)
chr3 (1-42)||(54008310-54008351)
chr3 (2-38)||(16607354-16607390)
chr3 (2-42)||(19679066-19679106)
chr3 (2-42)||(25823596-25823636)
chr3 (2-42)||(26043354-26043394)
chr3 (1-45)||(31267370-31267414)
chr3 (2-42)||(46843685-46843725)
[»] scaffold0633 (2 HSPs)
scaffold0633 (1-42)||(5320-5361)
scaffold0633 (3-42)||(5430-5469)
[»] scaffold0321 (2 HSPs)
scaffold0321 (1-42)||(1736-1777)
scaffold0321 (1-42)||(1629-1670)
[»] scaffold0200 (2 HSPs)
scaffold0200 (1-42)||(22405-22446)
scaffold0200 (1-42)||(22298-22339)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-41)||(491847-491886)
[»] scaffold0075 (1 HSPs)
scaffold0075 (1-42)||(17102-17143)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-42)||(67918-67959)
[»] scaffold0340 (1 HSPs)
scaffold0340 (1-42)||(14136-14177)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-42)||(11687-11728)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-46)||(282-327)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-42)||(49659-49700)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26597268 - 26597314
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26597268 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 26597314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 383644 - 383603
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  383644 ctaaaaagtgaattttgcttatattttgaaacggagggagta 383603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24914377 - 24914336
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24914377 ctaaaaagtgaattttgcttatattttgaaacggagggagta 24914336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10118655 - 10118611
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  10118655 ctaaaaagtgaattttgcttatattttgaaacggagagagtacat 10118611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28034052 - 28034008
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  28034052 ctaaaaagtgaattttgcttatattttgatacggagggagtacat 28034008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2157592 - 2157546
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  2157592 ctaaatagtgaattttacttatattttgaaacggagggagtacattt 2157546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11213319 - 11213365
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||    
T  11213319 ctaaaaagtgaattttgcttatattttgaaacagaggtagtacattt 11213365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22341999 - 22341957
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  22341999 ctaaaaagtgaattttgcttatattttaaaacggagggagtac 22341957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2157660 - 2157701
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  2157660 ctaaaaagtgaattttgcttatattttgaaacggatggagta 2157701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3750238 - 3750197
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  3750238 ctaaaaagtgaattttgcttgtattttgaaacggagggagta 3750197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12291048 - 12291089
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  12291048 ctaaaaaatgaattttgcttatattttgaaacggagggagta 12291089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12349852 - 12349811
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  12349852 ctaaaaagtgaattttgcttatattttgaaacggatggagta 12349811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14897084 - 14897043
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  14897084 ctaaaaagtgaattttgcttatattttgatacggagggagta 14897043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25371107 - 25371148
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  25371107 ctaaaaagtgaattttgcttatattttgaaacggatggagta 25371148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26597202 - 26597161
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  26597202 ctaaaaagtgaattttgtttatattttgaaacggagggagta 26597161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34246230 - 34246271
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  34246230 ctaaaaagtgaattttacttatattttgaaacggagggagta 34246271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12290982 - 12290946
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  12290982 ctaaaaagtgaattttgcttatattttgaaacggagg 12290946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10731576 - 10731619
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  10731576 ctaaaaagtaaaatttgcttatattttgaaacggagggagtaca 10731619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10118721 - 10118759
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggaggga 39  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  10118721 ctaaaaaatgaattttgcttatattttgaaacggaggga 10118759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32786219 - 32786265
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||    
T  32786219 ctaaaaagtaaaatttgcttatattttgaaacggagggagtaaattt 32786265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2943259 - 2943300
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  2943259 ctaaaaagtaaattttacttatattttgaaacggagggagta 2943300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3750304 - 3750345
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  3750304 ctaaaaagtcaattttgcttatattttgatacggagggagta 3750345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10644301 - 10644260
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  10644301 ctaaaaagtcaattttgcttatattttgatacggagggagta 10644260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10731510 - 10731469
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  10731510 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 10731469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11989245 - 11989286
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  11989245 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 11989286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28034118 - 28034159
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  28034118 ctaaaaagtgatttttgcttatattttgacacggagggagta 28034159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 32164964 - 32165001
Alignment:
Q  5 aaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  32164964 aaagtgaattttgcttatattttgaaacggatggagta 32165001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32710109 - 32710068
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  32710109 ctaaaaagtgaattttacttatattttaaaacggagggagta 32710068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 25371040 - 25371000
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  25371040 taaaaagtgaattttgtttatattttgaaacggaggaagta 25371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28648508 - 28648552
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||    
T  28648508 ctaaaaagtaaaatttgcttatattttggaacggagggagtacat 28648552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34246170 - 34246134
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagg 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  34246170 ctaaaatgtgaattttgcttatattttgaaacggagg 34246134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15090996 - 15091039
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||    
T  15090996 ctaaaaagtgaattttgtttatattttaaaacggaaggagtaca 15091039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11989183 - 11989141
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  11989183 ctaaaaagtaaaatttgcttatattttgagacggagggagtac 11989141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 235737 - 235696
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||||||||| | ||||||    
T  235737 ctaaaaagtgaattttgtttatattttgaaacgaatggagta 235696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2943203 - 2943162
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||| |||||||||||||||||||||| || |||||||||    
T  2943203 ctaaaaggtgaattttgcttatattttgagacagagggagta 2943162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9908173 - 9908132
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||| |||||||||||||    
T  9908173 ctaaaaagtaaaatttgcttatattttggaacggagggagta 9908132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12349918 - 12349959
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||| |||||||||||||||||| ||||||    
T  12349918 ctaaaaagtaaattttacttatattttgaaacggatggagta 12349959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21478590 - 21478549
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||    
T  21478590 ctaaaaagtcaattttgtttatattttgatacggagggagta 21478549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32364119 - 32364160
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  32364119 ctaaaaagtaaattttgcttatatttaaaaacggagggagta 32364160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 14897151 - 14897187
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggaggg 38  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  14897151 taaaaagtgatttttgcttatattttgacacggaggg 14897187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30507102 - 30507146
Alignment:
Q  1 ctaaaaagtgaattttgcttatat-tttgaaacggagggagtaca 44  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||    
T  30507102 ctaaaaagtgaattttgcttatataattgatacggagggagtaca 30507146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 31759428 - 31759468
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  31759428 taaaaagtcaattttgcttatatttagaaacggatggagta 31759468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 33169286 - 33169326
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || ||||||||||||| |||||||||||||||    
T  33169286 taaaaagtaaaatttgcttatatttagaaacggagggagta 33169326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 50)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10300924 - 10300968
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10300924 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 10300968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2851013 - 2850970
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2851013 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 2850970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6390222 - 6390263
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  6390222 ctaaaaagtgaattttgcttatattttgaaacggaggtagta 6390263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25196609 - 25196568
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  25196609 ctaaaaagtgaattttgcttatattttgaaacggaggaagta 25196568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27878879 - 27878838
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27878879 ctaaaaagtgaattttgcttatattttgatacggagggagta 27878838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27878906 - 27878947
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27878906 ctaaaaagtgaattttgcttatattttgatacggagggagta 27878947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32408195 - 32408236
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  32408195 ctaaaaagtgaattttgcttatattttgaaacgaagggagta 32408236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16810916 - 16810960
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  16810916 ctaaaaaatgaattttgcttatattttaaaacggagggagtacat 16810960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 20557726 - 20557687
Alignment:
Q  3 aaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  20557726 aaaaagtgaattttgcttatattttgaaacggagagagta 20557687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 27942429 - 27942472
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  27942429 taaaaagtaaaatttgcttatattttgaaacggagggagtacat 27942472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2927289 - 2927331
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  2927289 ctaaaaagtgaatttgtcttatattttgaaacggagggagtac 2927331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 34907772 - 34907810
Alignment:
Q  5 aaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  34907772 aaagtaaattttgcttatattttgaaacggagggagtac 34907810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2851079 - 2851120
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  2851079 ctaaaaagtgaattttgcttatattttgaaaaggatggagta 2851120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2927223 - 2927182
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  2927223 ctaaaaaatgaattttgcttatattttaaaacggagggagta 2927182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5212146 - 5212187
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  5212146 ctaaaaagtgaattttacttatattttaaaacggagggagta 5212187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10300858 - 10300817
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  10300858 ctaaaaagtgaattttgcttatattttaaaatggagggagta 10300817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24043182 - 24043227
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacatt 46  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||    
T  24043182 ctaaaaagagaattttgcttatattttaaaacggagagagtacatt 24043227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27940848 - 27940889
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  27940848 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 27940889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28003281 - 28003322
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  28003281 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 28003322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34907702 - 34907661
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  34907702 ctaaaaagtaaattttacttatattttgaaacggagggagta 34907661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48338973 - 48338932
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  48338973 ctaaaaattgaattttgcttatattttgaaacggagagagta 48338932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23361051 - 23361011
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagt 41  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  23361051 ctaaaaaataaattttgcttatattttgaaacggagggagt 23361011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 42691909 - 42691877
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacgg 34  Q
    |||||||||||||||||||||||||||||||||    
T  42691909 taaaaagtgaattttgcttatattttgaaacgg 42691877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43067061 - 43067021
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagt 41  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  43067061 ctaaaaagtaaattttgcttatattttgaaacggatggagt 43067021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46658835 - 46658879
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| || |||||||||||||| |||||||||||||||||    
T  46658835 ctaaaaagtaaaatttgcttatattttaaaacggagggagtacat 46658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6798674 - 6798628
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    |||||||||||||||| ||||||||||   |||||||||||||||||    
T  6798674 ctaaaaagtgaattttacttatattttatcacggagggagtacattt 6798628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23736036 - 23735986
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacatttcatc 51  Q
    ||||||||| ||||||||||||||||  ||||||| |||||| ||||||||    
T  23736036 ctaaaaagtaaattttgcttatatttaaaaacggatggagtagatttcatc 23735986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24166219 - 24166261
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  24166219 ctaaaaattaaattttgcttatattttgacacggagggagtac 24166261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25486753 - 25486707
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| | ||||||||||||||||| |||||||||||| ||||    
T  25486753 ctaaaaagtaatttttgcttatattttgacacggagggagtatattt 25486707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4188029 - 4187988
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||  ||||||||||||||    
T  4188029 ctaaaaagtgaattttacttatatttaaaaacggagggagta 4187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7345001 - 7345042
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  7345001 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 7345042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14206433 - 14206474
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  14206433 ctaaaaagtcaaatttgcttatatttagaaacggagggagta 14206474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14215123 - 14215164
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  14215123 ctaaaaagtcaaatttgcttatatttagaaacggagggagta 14215164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18941371 - 18941330
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  18941371 ctaaaaagtaaaatttgcttatattttgaaacggacggagta 18941330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24043116 - 24043075
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| |||||||| ||||||| |||||||||||||||||    
T  24043116 ctaaaaaatgaatttttcttatatgttgaaacggagggagta 24043075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 24166299 - 24166258
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  24166299 taaaaagtcaattttgcttatatttagaaatggagggagtac 24166258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25099639 - 25099680
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  25099639 ctaaaaagttaattttgcttatatttaaaaacggagggagta 25099680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25486819 - 25486860
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| |||||| |||||    
T  25486819 ctaaaaagtaaattttgcttatattttgacacggagagagta 25486860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28003215 - 28003174
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  28003215 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 28003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 28324756 - 28324715
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||| | |||||||||||||||| ||||||||||||||||    
T  28324756 taaaaattcaattttgcttatatttagaaacggagggagtac 28324715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30005979 - 30006020
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||| | ||||||||||||    
T  30005979 ctaaaaagtcaattttgcttatattttcatacggagggagta 30006020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34000986 - 34000945
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| |||||||| |||||||||||||| ||||||||||    
T  34000986 ctaaaaaatgaatttttcttatattttgaaatggagggagta 34000945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35160786 - 35160745
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  35160786 ctaaaaagtcaattttgcttatatttagaaacggatggagta 35160745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35160852 - 35160893
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  35160852 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 35160893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37066219 - 37066178
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||| ||||||||||||    
T  37066219 ctaaaaagtaaaatttgcttatattttgagacggagggagta 37066178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37066285 - 37066326
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  37066285 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 37066326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39098332 - 39098291
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||| |||||||| |||||||||||||||    
T  39098332 ctaaaaagtcaattttgtttatatttagaaacggagggagta 39098291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48339070 - 48339111
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  48339070 ctaaaaattgaattttgcttatattttaaaacggatggagta 48339111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16810872 - 16810840
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacg 33  Q
    |||||||||||||||| ||||||||||||||||    
T  16810872 ctaaaaagtgaattttacttatattttgaaacg 16810840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 30352262 - 30352230
Alignment:
Q  13 ttttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||||||||||||||||| |||||||||    
T  30352262 ttttgcttatattttgaaacggatggagtacat 30352230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 90)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 11994896 - 11994853
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11994896 taaaaagtgaattttgcttatattttgaaacggagggagtacat 11994853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31414859 - 31414902
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31414859 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 31414902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39151761 - 39151719
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39151761 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 39151719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15998314 - 15998355
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15998314 ctaaaaagtgaattttgcttatattttgaaacggagggagta 15998355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34662442 - 34662401
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34662442 ctaaaaagtgaattttgcttatattttgaaacggagggagta 34662401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15998248 - 15998204
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  15998248 ctaaaaagtaaattttgcttatattttgaaacggagggagtacat 15998204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24286868 - 24286912
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  24286868 ctaaaaaatgaattttgcttatattttgaaacggagggagtacat 24286912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31481902 - 31481860
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  31481902 ctaaaaagtgatttttgcttatattttgaaacggagggagtac 31481860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31852097 - 31852055
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  31852097 ctaaaaagtgaattttgcttatattttgagacggagggagtac 31852055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39151809 - 39151851
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  39151809 ctaaaaagtgaattttgcttatattttgaaacggagagagtac 39151851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 435243 - 435202
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  435243 ctaaaaagtcaattttgcttatattttgaaacggagggagta 435202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9135621 - 9135662
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  9135621 ctaaaaagtgaattttgcttatattttgatacggagggagta 9135662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11994960 - 11995001
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  11994960 ctaaaaagtgaattttgtttatattttgaaacggagggagta 11995001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13911381 - 13911422
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  13911381 ctaaaaagtgaattttgcttatattttgaaacggatggagta 13911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24286802 - 24286761
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  24286802 ctaaaaagtgaattttgcttatattttgaaacggatggagta 24286761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26040483 - 26040524
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  26040483 ctaaaaagttaattttgcttatattttgaaacggagggagta 26040524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31481968 - 31482009
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  31481968 ctaaaaagtgaattttgcttatattttgaaacggaggtagta 31482009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34755042 - 34755001
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  34755042 ctaaaaagtgaattttgtttatattttgaaacggagggagta 34755001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35838755 - 35838714
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  35838755 ctaaaaaatgaattttgcttatattttgaaacggagggagta 35838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35838821 - 35838862
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  35838821 ctaaaaagtgaattttgcttatattttgaaacggatggagta 35838862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38149401 - 38149360
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  38149401 ctaaaaagtgaattttgcttatattttgaaacggaaggagta 38149360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41649635 - 41649676
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  41649635 ctaaaaagtgaattttgcttatattttgagacggagggagta 41649676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42761270 - 42761229
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  42761270 ctaaaaagtgaattttgcttatattttgaaacgtagggagta 42761229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44371256 - 44371215
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  44371256 ctaaaaagtgaattttgcttatattttgagacggagggagta 44371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6669546 - 6669502
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  6669546 ctaaaaaataaattttgcttatattttgaaacggagggagtacat 6669502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12568472 - 12568432
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  12568472 taaaaagtgaattttgcttatattttaaaacggagggagta 12568432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42468892 - 42468848
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||    
T  42468892 ctaaaaagtgaattttgcttatattttaaaacggaaggagtacat 42468848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 43147539 - 43147579
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  43147539 taaaaagtgaattttgcttatattttaaaacggagggagta 43147579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 41649566 - 41649527
Alignment:
Q  3 aaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  41649566 aaaaggtgaattttgcttatattttgaaacggagggagta 41649527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16426945 - 16426903
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  16426945 ctaaaaagtcaattttgcttatatttagaaacggagggagtac 16426903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22954875 - 22954921
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||||    
T  22954875 ctaaaaagtgaattttgcttatattttaacacggagggagtatattt 22954921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30785666 - 30785700
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30785666 ctaaaaagtgaattttgcttatattttgaaacgga 30785700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40094431 - 40094473
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  40094431 ctaaaaaatgaattttgcttatatttagaaacggagggagtac 40094473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45925281 - 45925247
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||||||||||    
T  45925281 ctaaaaagtgaattttgcttatattttgaaacgga 45925247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 46518048 - 46518090
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  46518048 ctaaaaagtaaaatttgcttatattttgaaacggagggagtac 46518090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 47912609 - 47912567
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  47912609 ctaaaaagtcaattttgcttatatttagaaacggagggagtac 47912567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51373882 - 51373916
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||||||||||    
T  51373882 ctaaaaagtgaattttgcttatattttgaaacgga 51373916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 435309 - 435350
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  435309 ctaaaaagtgaattttgcttatattttaaaacggagtgagta 435350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1344471 - 1344512
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||| ||||||||||||||    
T  1344471 ctaaaaagtaaattttgcttatattttaaaacggagggagta 1344512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4682974 - 4682933
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  4682974 ctaaaaagttaattttgcttatattttgatacggagggagta 4682933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5852725 - 5852684
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  5852725 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 5852684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6763437 - 6763478
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  6763437 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 6763478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16661697 - 16661656
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  16661697 ctaaaaagtgaattttacttatattttgaaacagagggagta 16661656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17012984 - 17013025
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  17012984 ctaaaaaatgaattttgcttatattttgaaacggacggagta 17013025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18023716 - 18023757
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  18023716 ctaaaaagtgaattttgcttatattttgatacggatggagta 18023757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26040417 - 26040376
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  26040417 ctaaaaagtgaattttccttatattttgaaatggagggagta 26040376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29673841 - 29673800
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  29673841 ctaaaaagtgaattttgcttatatttagaaacagagggagta 29673800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30785597 - 30785556
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  30785597 ctaaaaagtgaattttgcttatatgttaaaacggagggagta 30785556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 31919873 - 31919836
Alignment:
Q  5 aaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  31919873 aaagtgaattttgcttatattttaaaacggagggagta 31919836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31919943 - 31919984
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  31919943 ctaaaaaataaattttgcttatattttgaaacggagggagta 31919984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33324104 - 33324063
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  33324104 ctaaaaagtgaaatttgtttatattttgaaacggagggagta 33324063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34062046 - 34062087
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  34062046 ctaaaaagtgaaatttgcttatattttggaacggagggagta 34062087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34755090 - 34755131
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  34755090 ctaaaaagtaaatgttgcttatattttgaaacggagggagta 34755131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 35161324 - 35161357
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacgga 35  Q
    ||||||||||||||||||||||||||||||||||    
T  35161324 taaaaagtgaattttgcttatattttgaaacgga 35161357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42468946 - 42468987
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  42468946 ctaaaaagtgaattttgcttatattttaaaacggaaggagta 42468987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42914639 - 42914680
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  42914639 ctaaaaagtgaattttgcttatattttgaaacagatggagta 42914680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45242845 - 45242886
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  45242845 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 45242886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45925347 - 45925388
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  45925347 ctaaaaagtaaattttgcttatattttgatacggagggagta 45925388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49980654 - 49980613
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  49980654 ctaaaaaataaattttgcttatattttgaaacggagggagta 49980613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49980697 - 49980738
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  49980697 ctaaaaaatgaattttgcttatattttgaaacggatggagta 49980738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 15311508 - 15311468
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  15311508 taaaaagtgaattttgcttatattttgatacagagggagta 15311468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 16661709 - 16661749
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  16661709 taaaaagtgaattttgtttatatttttaaacggagggagta 16661749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 26059223 - 26059263
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  26059223 taaaaagtaaaatttgcttatattttgaaacggagggagta 26059263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31327604 - 31327560
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||    
T  31327604 ctaaaaactgaattttgcttatattttaaaacggaggaagtacat 31327560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33324148 - 33324192
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| || |||||||||||||||| |||||||||||||||    
T  33324148 ctaaaaagtaaaatttgcttatattttgagacggagggagtacat 33324192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 38149468 - 38149508
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  38149468 taaaaaatgaattttgcttatattttaaaacggagggagta 38149508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #67
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 45749100 - 45749140
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  45749100 taaaaagtcaattttgcttatattttgaaacagagggagta 45749140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #68
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39181086 - 39181043
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||| || |||||||||||||||| ||||||||||||||    
T  39181086 ctaaaaagtaaaatttgcttatattttgagacggagggagtaca 39181043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #69
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7151642 - 7151676
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  7151642 ctaaaaagtgaattttgcttatatttagaaacgga 7151676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #70
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7230046 - 7230004
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| ||||||||||||||||  |||||||||||||||    
T  7230046 ctaaaaagttaattttgcttatatttaaaaacggagggagtac 7230004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #71
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 31327674 - 31327704
Alignment:
Q  5 aaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||||||    
T  31327674 aaagtgaattttgcttatattttgaaacgga 31327704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #72
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39181154 - 39181200
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| || |||||||||||||||| |||||||||||| ||||    
T  39181154 ctaaaaagtaaaatttgcttatattttgatacggagggagtatattt 39181200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #73
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44371285 - 44371319
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  44371285 ctaaaaagtgaattttgcttatattttgtaacgga 44371319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #74
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47912675 - 47912717
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||    
T  47912675 ctaaaaagtaaattttgcttatattttaaaacggaaggagtac 47912717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #75
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12568540 - 12568580
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  12568540 ctaaaaagtaaattttgcttata-tttgaaacggagggagta 12568580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #76
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13911323 - 13911282
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||| |||||||||| ||||||||||||||    
T  13911323 ctaaaaagtcaattttacttatattttaaaacggagggagta 13911282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #77
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17988307 - 17988348
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||| ||||||||||||||||||||||||    
T  17988307 ctaaaaagtaaaatttgtttatattttgaaacggagggagta 17988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #78
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18023650 - 18023609
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||    
T  18023650 ctaaaaagtaaattttgcttatattttgaaatggaggaagta 18023609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #79
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24023402 - 24023361
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | |||||||||||||||| |||||||||||||||    
T  24023402 ctaaaaaataaattttgcttatatttagaaacggagggagta 24023361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #80
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24023468 - 24023509
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  24023468 ctaaaaagttaattttgcttatatttaaaaacggagggagta 24023509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #81
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26660681 - 26660640
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||| ||||||||||||    
T  26660681 ctaaaaagtaaaatttgcttatattttgagacggagggagta 26660640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #82
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27146127 - 27146168
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  27146127 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 27146168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #83
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34120951 - 34120910
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||  ||||||||    
T  34120951 ctaaaaagtgaattttgcttatattttgagaccaagggagta 34120910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #84
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39422100 - 39422059
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||    
T  39422100 ctaaaaagtaaattttgcttataatttgaaacggatggagta 39422059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #85
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42140433 - 42140474
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||    
T  42140433 ctaaaaagtcaattttgcttatattttgatacggatggagta 42140474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #86
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48605173 - 48605214
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||| |||||||||||||    
T  48605173 ctaaaaagtcaaatttgcttatattttggaacggagggagta 48605214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #87
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49363487 - 49363528
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  49363487 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 49363528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #88
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 34121022 - 34121062
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| ||||||||||||||||| ||||||| ||||||    
T  34121022 taaaaagtaaattttgcttatattttaaaacggatggagta 34121062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #89
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 42761337 - 42761377
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| |||||| |||||||||| ||||||||||||||    
T  42761337 taaaaagtaaattttacttatattttaaaacggagggagta 42761377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #90
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 49188310 - 49188349
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  49188310 taaaaagtgaattttgcttatatttt-aaacggatggagta 49188349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36447 - 36405
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36447 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 36405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36513 - 36554
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  36513 ctaaaaagtgaattttgcttatattttagaacggagggagta 36554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 54)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8618434 - 8618392
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8618434 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 8618392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5226056 - 5226015
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5226056 ctaaaaagtgaattttgcttatattttgaaacggagggagta 5226015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6168716 - 6168675
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6168716 ctaaaaagtgaattttgcttatattttgaaacggagggagta 6168675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16067176 - 16067217
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16067176 ctaaaaagtgaattttgcttatattttgaaacggagggagta 16067217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21369310 - 21369266
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  21369310 ctaaaaagtgaattttgcttatattttgaaacggatggagtacat 21369266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26395256 - 26395299
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  26395256 ctaaaaagtgaattttacttatattttgaaacggagggagtaca 26395299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36917225 - 36917267
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  36917225 ctaaaaagtgaattttgcttgtattttgaaacggagggagtac 36917267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4162840 - 4162799
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  4162840 ctaaaaagtgaattttgcttatattttgaaacggaaggagta 4162799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12891391 - 12891432
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12891391 ctaaaaagtgaattttgcttatattttgaaacggaggaagta 12891432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14550135 - 14550176
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14550135 ctaaaaagtgaattttgcttatattttaaaacggagggagta 14550176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18003894 - 18003853
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  18003894 ctaaaaagtgaattttgcttatattttgaaacggatggagta 18003853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 16056780 - 16056740
Alignment:
Q  3 aaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  16056780 aaaaagtcaattttgcttatattttgaaacggagggagtac 16056740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19784571 - 19784527
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  19784571 ctaaaaagtaaaatttgcttatattttgaaacggagggagtacat 19784527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16067110 - 16067068
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  16067110 ctaaaaaatgtattttgcttatattttgaaacggagggagtac 16067068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21369376 - 21369418
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  21369376 ctaaaaagtaaattttgcttatattttaaaacggagggagtac 21369418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34186392 - 34186350
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  34186392 ctaaaaagtcatttttgcttatattttgaaacggagggagtac 34186350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6168782 - 6168823
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  6168782 ctaaaaaatgaattttgcttatattttgaaacggatggagta 6168823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8618500 - 8618541
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  8618500 ctaaaaagtgaattttgcttatattttgaaagcgagggagta 8618541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12891325 - 12891284
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  12891325 ctaaaaagtgaattttgcttatattttgaaatggagtgagta 12891284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14274237 - 14274278
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  14274237 ctaaaaagtgaattttgcttatattttaaaacggagagagta 14274278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19784626 - 19784667
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  19784626 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 19784667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22474041 - 22474082
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  22474041 ctaaaaaatgaattttgcttatatttagaaacggagggagta 22474082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22635416 - 22635457
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  22635416 ctaaaaagtgaaatttgcttatattttaaaacggagggagta 22635457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25600614 - 25600573
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  25600614 ctaaaaagtgaattttgtttatattttgacacggagggagta 25600573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25713909 - 25713868
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  25713909 ctaaaaagtgatttttgcttatattttgaaacggaggaagta 25713868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25713964 - 25714005
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  25713964 ctaaaaattgaattttgcttatattttgaaacggagagagta 25714005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26168291 - 26168332
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  26168291 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 26168332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28907250 - 28907209
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  28907250 ctaaaaagtgaattttacttatattttgaaacagagggagta 28907209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28943645 - 28943604
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  28943645 ctaaaaagtgaattttacttatattttgaaacagagggagta 28943604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33696758 - 33696799
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  33696758 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 33696799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36917204 - 36917163
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  36917204 ctaaaaagtgaattttgcttatactttaaaacggagggagta 36917163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 28907262 - 28907302
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  28907262 taaaaagtgaattttgtttatatttttaaacggagggagta 28907302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 28943657 - 28943697
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  28943657 taaaaagtgaattttgtttatatttttaaacggagggagta 28943697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 36337838 - 36337878
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  36337838 taaaaagtgaattttgcttatatttaaaaacggagggagta 36337878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40680300 - 40680264
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagg 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  40680300 ctaaaaagtgaattttgctaatattttgaaacggagg 40680264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34733403 - 34733360
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||    
T  34733403 ctaaaaagtaaattttgcttatatttagaaacggatggagtaca 34733360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5226122 - 5226152
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  5226122 ctaaaaagtgaattttgcttatattttgaaa 5226152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26395203 - 26395169
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  26395203 ctaaaaagtgaattttacttatattttgaaacgga 26395169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8222046 - 8222087
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||| |||||| |||||    
T  8222046 ctaaaaaatgaattttgcttatattttgacacggagagagta 8222087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8694520 - 8694479
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  8694520 ctaaaaagtcaattttgcttatatttagaaacggatggagta 8694479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8694586 - 8694627
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||| |||||||| |||||||||||||||    
T  8694586 ctaaaaagtcaattttgtttatatttagaaacggagggagta 8694627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15966059 - 15966100
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||| ||||    
T  15966059 ctaaaaagtaaaatttgcttatattttgaaacggaggaagta 15966100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25600655 - 25600696
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||    
T  25600655 ctaaaaagtgaattttgtttatattttaaaacggatggagta 25600696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29255754 - 29255795
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  29255754 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 29255795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34399602 - 34399561
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||    
T  34399602 ctaaaaaatgaattttgcttatattttaaaacggaggaagta 34399561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35245628 - 35245587
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  35245628 ctaaaaagtaaaatttgcttatattttgaaactgagggagta 35245587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35245711 - 35245752
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  35245711 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 35245752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 38283419 - 38283378
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||| || |||||||||||||| |||||||||||||||    
T  38283419 taaaaagtaaaatttgcttatattttaaaacggagggagtac 38283378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39126117 - 39126158
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||| |||||||||||||    
T  39126117 ctaaaaagtaaaatttgcttatattttggaacggagggagta 39126158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39148561 - 39148602
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | ||||||||||||||||| ||||||||||||||    
T  39148561 ctaaaaaataaattttgcttatattttaaaacggagggagta 39148602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39603007 - 39603048
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  39603007 ctaaaaagtaaaatttgcttatattttgaaacggatggagta 39603048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43340452 - 43340411
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||    
T  43340452 ctaaaaagtaaattttgtttatattttgaaacgaagggagta 43340411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11380289 - 11380333
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| ||||||||||||||||  |||| ||||||||||||    
T  11380289 ctaaaaagtcaattttgcttatatttaaaaaccgagggagtacat 11380333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 13907025 - 13906985
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||| | ||||||||||||||| ||||||||    
T  13907025 taaaaagtgaatttggtttatattttgaaacgaagggagta 13906985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 66)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45861108 - 45861150
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45861108 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 45861150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 54677387 - 54677345
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54677387 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 54677345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1945402 - 1945357
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacatt 46  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1945402 ctaaaaagtcaattttgcttatattttgaaacggagggagtacatt 1945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2994758 - 2994717
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2994758 ctaaaaagtgaattttgcttatattttgaaacggagggagta 2994717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45861042 - 45861001
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45861042 ctaaaaagtgaattttgcttatattttgaaacggagggagta 45861001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47628384 - 47628425
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47628384 ctaaaaagtgaattttgcttatattttgaaacggagggagta 47628425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54927208 - 54927249
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  54927208 ctaaaaagtgaattttgcttatattttgaaacggagggagta 54927249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35207542 - 35207584
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  35207542 ctaaaaagtaaattttgcttatattttgaaacggagggagtac 35207584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48796278 - 48796320
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  48796278 ctaaaaaatgaattttgcttatattttgaaacggagggagtac 48796320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 171165 - 171124
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  171165 ctaaaaagtgaattttgcttatattttgaaacagagggagta 171124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2994824 - 2994865
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  2994824 ctaaaaaatgaattttgcttatattttgaaacggagggagta 2994865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7695232 - 7695273
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  7695232 ctaaaaagtaaattttgcttatattttgaaacggagggagta 7695273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9011848 - 9011889
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  9011848 ctaaaaagtgaattttgcttatattttaaaacggagggagta 9011889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35207476 - 35207435
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  35207476 ctaaaaagtaaattttgcttatattttgaaacggagggagta 35207435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39466741 - 39466700
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  39466741 ctaaaaagtgaattttgcttatattttgatacggagggagta 39466700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 7695165 - 7695125
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  7695165 taaaaagtgaattttgcttatattttgaaacggatggagta 7695125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 31860755 - 31860795
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  31860755 taaaaagtgaattttggttatattttgaaacggagggagta 31860795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 36235714 - 36235674
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  36235714 taaaaagtgaattttgcttatattttgaaatggagggagta 36235674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36235781 - 36235824
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||    
T  36235781 ctaaaaagtaaattttgcttatattttgaaacggagggattaca 36235824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18592448 - 18592490
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  18592448 ctaaaaagtgaattttgcttagatttagaaacggagggagtac 18592490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31860688 - 31860654
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31860688 ctaaaaagtgaattttgcttatattttgaaacgga 31860654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31914431 - 31914477
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  31914431 ctaaaaagtcaattttacttatatttagaaacggagggagtacattt 31914477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42546024 - 42545982
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  42546024 ctaaaaaataaattttgcttatattttgaaacggagggagtac 42545982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42911718 - 42911760
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  42911718 ctaaaaattgaattttgcttatattttgagacggagggagtac 42911760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 45070869 - 45070831
Alignment:
Q  4 aaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  45070869 aaaagttaattttgcttatattttgaaacggagggagta 45070831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47628318 - 47628280
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggaggga 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  47628318 ctaaaaagtaaattttgcttatattttgaaacggaggga 47628280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 54927142 - 54927100
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    
T  54927142 ctaaaaactgaattttgcttatattttgaaacagagggagtac 54927100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 171231 - 171272
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  171231 ctaaaaaatgaattttgcttatattttgagacggagggagta 171272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15133864 - 15133823
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  15133864 ctaaaaagtaaattttgcttatattttgaaacggaggaagta 15133823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20792077 - 20792118
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  20792077 ctaaaaagtgatttttacttatattttgaaacggagggagta 20792118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25856113 - 25856154
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  25856113 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 25856154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31808359 - 31808318
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  31808359 ctaaaaagtgaattttgcttatattttaaaacggatggagta 31808318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34166149 - 34166108
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  34166149 ctaaaaagtcaattttgcttatatttagaaacggagggagta 34166108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38675242 - 38675283
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  38675242 ctaaaaagtgaaatttgcttatattttgaaatggagggagta 38675283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39466806 - 39466847
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  39466806 ctaaaaagtgatttttgcttatattttgacacggagggagta 39466847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48042694 - 48042735
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  48042694 ctaaaaagtgaaatttgcttatattttgaaactgagggagta 48042735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51545489 - 51545530
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  51545489 ctaaaaaatgaattttgcttatattttggaacggagggagta 51545530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51883119 - 51883160
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  51883119 ctaaaaagtgaattttacttatattttgaaatggagggagta 51883160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18592382 - 18592338
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||    
T  18592382 ctaaaaagtcaattttgcttatatttaaaaacggagggagtacat 18592338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 35967485 - 35967525
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  35967485 taaaaagtcaattttgcttatatttagaaacggagggagta 35967525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12721749 - 12721792
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||| || |||||||||||||||||||||| ||||||||    
T  12721749 ctaaaaagtaaaatttgcttatattttgaaacggatggagtaca 12721792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 48079619 - 48079662
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||| || |||||||||||||| ||||||||||||||||    
T  48079619 ctaaaaagtaaaatttgcttatattttaaaacggagggagtaca 48079662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 48088099 - 48088142
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    |||||||| ||||||||||||||||  |||||||||||||||||    
T  48088099 taaaaagtcaattttgcttatatttaaaaacggagggagtacat 48088142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12721682 - 12721641
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  12721682 ctaaaaagtaaaatttgcttatattttgaaacagagggagta 12721641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13743961 - 13744002
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||| ||||||||||||    
T  13743961 ctaaaaagtaaaatttgcttatattttgagacggagggagta 13744002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 15641259 - 15641226
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||| |||||||||||||||||||||||||||    
T  15641259 taaaaaatgaattttgcttatattttgaaacgga 15641226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17659568 - 17659609
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||| ||||||||||||    
T  17659568 ctaaaaagtaaaatttgcttatattttgagacggagggagta 17659609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24156176 - 24156135
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  24156176 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 24156135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24529610 - 24529569
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||| |||||||||||| ||||||||||||    
T  24529610 ctaaaaagtcaattttacttatattttgatacggagggagta 24529569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 26651572 - 26651605
Alignment:
Q  9 tgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||| ||||||||||||    
T  26651572 tgaattttgcttatattttgacacggagggagta 26651605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30051446 - 30051487
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||| ||||||||||||    
T  30051446 ctaaaaagtaaaatttgcttatattttgagacggagggagta 30051487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43635873 - 43635832
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||| |||||||||||||||||||||||||    
T  43635873 ctaaaaagtaaaattttcttatattttgaaacggagggagta 43635832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48079553 - 48079512
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  48079553 ctaaaaagtaaaatttgcttatattttgaaacggatggagta 48079512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48796213 - 48796172
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  48796213 ctaaaaaatgaattttgcttatattttaaaacggatggagta 48796172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50038487 - 50038446
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  50038487 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 50038446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50045709 - 50045668
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  50045709 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 50045668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51126142 - 51126101
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  51126142 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 51126101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51126208 - 51126249
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||| ||||||||||||    
T  51126208 ctaaaaagtaaaatttgcttatattttgagacggagggagta 51126249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 53508537 - 53508496
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  53508537 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 53508496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54675372 - 54675413
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  54675372 ctaaaaagtcaattttgcttatatttagaaacggaaggagta 54675413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 56420534 - 56420575
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  56420534 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 56420575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 9011781 - 9011742
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  9011781 taaaaagtgaattttgcttatattttgatac-gagggagta 9011742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17659502 - 17659458
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| || ||||||||||||||||||| || |||||||||    
T  17659502 ctaaaaagtaaaatttgcttatattttgaaacagatggagtacat 17659458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 51545422 - 51545390
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacg 33  Q
    ||||||||||||||||| |||||||||||||||    
T  51545422 ctaaaaagtgaattttgtttatattttgaaacg 51545390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #65
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 51975228 - 51975268
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  51975228 taaaaagtaaaatttgcttatattttaaaacggagggagta 51975268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #66
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 53551699 - 53551739
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || ||||||||||||| |||||||||||||||    
T  53551699 taaaaagtaaaatttgcttatatttagaaacggagggagta 53551739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 55)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18649658 - 18649616
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18649658 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 18649616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6048065 - 6048106
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6048065 ctaaaaagtgaattttgcttatattttgaaacggagggagta 6048106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21208929 - 21208888
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21208929 ctaaaaagtgaattttgcttatattttgaaacggagggagta 21208888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33618300 - 33618341
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33618300 ctaaaaagtgaattttgcttatattttgaaacggagggagta 33618341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 7354806 - 7354766
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7354806 taaaaagtgaattttgcttatattttgaaacggagggagta 7354766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18649699 - 18649742
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  18649699 ctaaaaagtgaattttgcttatattttgaaacggaaggagtaca 18649742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32749929 - 32749976
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacatttc 48  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  32749929 ctaaaaagtgaattttgcttatattttgaaatggagggagtacttttc 32749976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44402121 - 44402079
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  44402121 ctaaaaagtgaattttgcttatattttgacacggagggagtac 44402079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7728470 - 7728429
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  7728470 ctaaaaactgaattttgcttatattttgaaacggagggagta 7728429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18468978 - 18468937
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  18468978 ctaaaaagtgaattttgcttatattttgaaacggatggagta 18468937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18469044 - 18469085
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  18469044 ctaaaaagtgaattttgcttatattttgaaacggatggagta 18469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21208995 - 21209036
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  21208995 ctaaaaagtgaattttgcttatattttaaaacggagggagta 21209036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27692705 - 27692746
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  27692705 ctaaaaagtgaattttgcttatattttgaaacggatggagta 27692746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44402187 - 44402228
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  44402187 ctaaaaagtgaattttgcttatattttgaaacggagagagta 44402228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 38962477 - 38962437
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  38962477 taaaaagtgaattttgcttatattttaaaacggagggagta 38962437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40340572 - 40340616
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  40340572 ctaaaaagtaaaatttgcttatattttgaaacggagggagtacat 40340616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 42263051 - 42263012
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagt 41  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  42263051 taaaaaatgaattttgcttatattttgaaacggagggagt 42263012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3094958 - 3094924
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3094958 ctaaaaagtgaattttgcttatattttgaaacgga 3094924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6047956 - 6047918
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggaggga 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  6047956 ctaaaaagtgaattttgcttatattttgatacggaggga 6047918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19908542 - 19908504
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggaggga 39  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  19908542 ctaaaaagtgaattttgcttatattttaaaacggaggga 19908504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22352480 - 22352438
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  22352480 ctaaatagtgaattttgcttatattttgaaacggatggagtac 22352438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40846567 - 40846609
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  40846567 ctaaaaagtgaattttgtttatattttaaaacggagggagtac 40846609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44949379 - 44949337
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  44949379 ctaaaaagtcaattttgcttatatttagaaacggagggagtac 44949337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3095024 - 3095065
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  3095024 ctaaaaaatgaattttgattatattttgaaacggagggagta 3095065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7728536 - 7728577
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  7728536 ctaaaaattgaattttgcttatattttgaaacggaggaagta 7728577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15080941 - 15080982
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  15080941 ctaaaaagtgaattttgcttatattttgatacggaggaagta 15080982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24971242 - 24971201
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  24971242 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 24971201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26567673 - 26567632
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  26567673 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 26567632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27692639 - 27692598
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  27692639 ctaaaaagtgaattttgcttatattttaaaacggaaggagta 27692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33618234 - 33618193
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  33618234 ctaaaaaatgaattttgcttatattttgaaacggatggagta 33618193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40340506 - 40340465
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  40340506 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 40340465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40669066 - 40669107
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  40669066 ctaaaaagtaaattttgcttatatttagaaacggagggagta 40669107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 3373069 - 3373109
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  3373069 taaaaagtgaattttacttatattttgagacggagggagta 3373109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19908608 - 19908643
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggag 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  19908608 ctaaaaagtgaattttacttatattttgaaacggag 19908643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22352546 - 22352585
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggag 40  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  22352546 ctaaaaagtgaattttgtttatattttgacacggagggag 22352585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 14394892 - 14394926
Alignment:
Q  9 tgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||||||||||| |||||    
T  14394892 tgaattttgcttatattttgaaacggaggaagtac 14394926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25899395 - 25899353
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| |||||| |||||||||| |||||||||||||||    
T  25899395 ctaaaaagtaaattttacttatattttaaaacggagggagtac 25899353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42792703 - 42792669
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  42792703 ctaaaaagtgaattttgcttatattttaaaacgga 42792669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43514859 - 43514905
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| || |||||||||||||||||||||| |||||| ||||    
T  43514859 ctaaaaagtaaaatttgcttatattttgaaacggatggagtatattt 43514905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 4032609 - 4032576
Alignment:
Q  9 tgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||| ||||||||||    
T  4032609 tgaattttgcttatattttgaaatggagggagta 4032576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4898202 - 4898161
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  4898202 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 4898161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4945596 - 4945555
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  4945596 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 4945555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9158011 - 9157970
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  9158011 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 9157970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24971308 - 24971349
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||| ||||||||||    
T  24971308 ctaaaaagtaaaatttgcttatattttgaaatggagggagta 24971349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25668514 - 25668555
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  25668514 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 25668555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26567739 - 26567780
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  26567739 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 26567780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29573851 - 29573810
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  29573851 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 29573810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30202587 - 30202628
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| | |||||||||||||| |||||||||||||||    
T  30202587 ctaaaaagtcagttttgcttatatttagaaacggagggagta 30202628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34438848 - 34438889
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  34438848 ctaaaaagttaattttgcttatatttagaaacggatggagta 34438889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35607452 - 35607411
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||| |||||||||||||||||||||||||    
T  35607452 ctaaaaagtcaaatttacttatattttgaaacggagggagta 35607411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36396892 - 36396851
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||  ||||||||||||||| ||||||||    
T  36396892 ctaaaaagtgaattttatttatattttgaaacgtagggagta 36396851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37486102 - 37486143
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  37486102 ctaaaaagtaaaatttgcttatatttagaaacggagggagta 37486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42792757 - 42792798
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  42792757 ctaaaaaatgaattttgcttatattttaaaacggatggagta 42792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 19267936 - 19267976
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| |||||||||||||||| ||||| |||||||||    
T  19267936 taaaaagtcaattttgcttatatttagaaacagagggagta 19267976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 30905228 - 30905268
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || ||| |||||||||||||||||||||||||    
T  30905228 taaaaagtaaaatttacttatattttgaaacggagggagta 30905268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 54)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4786739 - 4786698
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4786739 ctaaaaagtgaattttgcttatattttgaaacggagggagta 4786698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5526600 - 5526641
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5526600 ctaaaaagtgaattttgcttatattttgaaacggagggagta 5526641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38815840 - 38815799
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38815840 ctaaaaagtgaattttgcttatattttgaaacggagggagta 38815799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38815906 - 38815947
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38815906 ctaaaaagtgaattttgcttatattttgaaacggagggagta 38815947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45145639 - 45145598
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45145639 ctaaaaagtgaattttgcttatattttgaaacggagggagta 45145598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 19163424 - 19163463
Alignment:
Q  3 aaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19163424 aaaaagtgaattttgcttatattttgaaacggagggagta 19163463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4786763 - 4786805
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  4786763 ctaaaaagtgaattttgcttatattttgaaacggatggagtac 4786805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7011895 - 7011937
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  7011895 ctaaaaagtgaattttgcttatattttgaaacggaaggagtac 7011937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8769678 - 8769637
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  8769678 ctaaaaagtgaattttgcttatattttgaaacggatggagta 8769637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11295956 - 11295915
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  11295956 ctaaaaagtgaattttgcttatattttgaaacggatggagta 11295915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29007515 - 29007556
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  29007515 ctaaaaagtgaattttgcttatattttgatacggagggagta 29007556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30245607 - 30245656
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacatttcat 50  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||||||    
T  30245607 ctaaaaagtgaattttacttatattttaaaacggagggagtagatttcat 30245656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40305049 - 40305008
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  40305049 ctaaaaagtgaattttgcttatattttgatacggagggagta 40305008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40739594 - 40739635
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  40739594 ctaaaaagtaaattttgcttatattttgaaacggagggagta 40739635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33473021 - 33472981
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  33473021 taaaaattgaattttgcttatattttgaaacggagggagta 33472981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32480299 - 32480342
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  32480299 ctaaaaagtaaaatttgcttatattttgaaacggagggagtaca 32480342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1256193 - 1256235
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  1256193 ctaaaaaatgaattttgcttatattttgaaacggaaggagtac 1256235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18126092 - 18126054
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggaggga 39  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  18126092 ctaaaaagtgaattttgcttatattttaaaacggaggga 18126054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27184317 - 27184355
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggaggga 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  27184317 ctaaaaagtaaattttgcttatattttgaaacggaggga 27184355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32016877 - 32016911
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32016877 ctaaaaagtgaattttgcttatattttgaaacgga 32016911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42666220 - 42666262
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  42666220 ctaaaaaaagaattttgcttatattttgaaacggagggagtac 42666262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45441139 - 45441097
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  45441139 ctaaaaagtgaattttacttatattttgaaatggagggagtac 45441097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5526532 - 5526491
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  5526532 ctaaaatgtgaattttgcatatattttgaaacggagggagta 5526491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27184251 - 27184210
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  27184251 ctaaaaggtgaattttgcttatattttgagacggagggagta 27184210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28435449 - 28435408
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  28435449 ctaaaaaatgaattttgcttatattttgacacggagggagta 28435408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34194597 - 34194556
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  34194597 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 34194556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34194663 - 34194704
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  34194663 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 34194704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35063563 - 35063604
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  35063563 ctaaaaagtcaattttgcttatattttgatacggagggagta 35063604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36315027 - 36315068
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  36315027 ctaaaaagtgaattttacttatattttgaaacggaaggagta 36315068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37922915 - 37922956
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  37922915 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 37922956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 7011818 - 7011786
Alignment:
Q  12 attttgcttatattttgaaacggagggagtaca 44  Q
    |||||||||||||||||||||||||||||||||    
T  7011818 attttgcttatattttgaaacggagggagtaca 7011786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33570611 - 33570651
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagt 41  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  33570611 ctaaaaagtgaattttacttatattttaaaacggagggagt 33570651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8769744 - 8769779
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggag 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  8769744 ctaaaaagtgaattttacttatattttgaaacggag 8769779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12955858 - 12955823
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggag 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  12955858 ctaaaaaatgaattttgcttatattttgaaacggag 12955823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45145705 - 45145748
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||    
T  45145705 ctaaaaaatgaattttgcttatattttgaaaagaagggagtaca 45145748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8568923 - 8568969
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| ||||||| ||||||||||| |||||||||||| ||||    
T  8568923 ctaaaaagtcaattttgtttatattttgatacggagggagtatattt 8568969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32016811 - 32016769
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||  ||||||||||||||| |||||||||    
T  32016811 ctaaaaagtgaattttatttatattttgaaacgaagggagtac 32016769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 35063496 - 35063454
Alignment:
Q  3 aaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||| ||||||||||||||||  |||||||||||||||||    
T  35063496 aaaaagtcaattttgcttatatttaaaaacggagggagtacat 35063454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35447821 - 35447779
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| || |||||||||||||||||||||| |||||||    
T  35447821 ctaaaaagtaaaatttgcttatattttgaaacggatggagtac 35447779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 36308550 - 36308508
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtaca 44  Q
    |||||||||||||||||||||||||| |||  |||||||||||    
T  36308550 taaaaagtgaattttgcttatattttaaaatagagggagtaca 36308508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36308617 - 36308651
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacgga 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  36308617 ctaaaaagtgaattttacttatattttgaaacgga 36308651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42631816 - 42631770
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| || ||||||||||||| ||||||||||||||| ||||    
T  42631816 ctaaaaagtaaaatttgcttatatttagaaacggagggagtaaattt 42631770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13832510 - 13832469
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | |||||| |||||||||||||||||||||||||    
T  13832510 ctaaaaaataaattttacttatattttgaaacggagggagta 13832469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13832576 - 13832617
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  13832576 ctaaaaagtgaattttacttatattttgaaatggatggagta 13832617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17911400 - 17911359
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||| ||||||||||||    
T  17911400 ctaaaaagtaaaatttgcttatattttgagacggagggagta 17911359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 36314963 - 36314992
Alignment:
Q  3 aaaaagtgaattttgcttatattttgaaac 32  Q
    ||||||||||||||||||||||||||||||    
T  36314963 aaaaagtgaattttgcttatattttgaaac 36314992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38883983 - 38883942
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | || |||||||||||||||||||||||||||||    
T  38883983 ctaaaaaataaaatttgcttatattttgaaacggagggagta 38883942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39655454 - 39655413
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||| |||||||||||||    
T  39655454 ctaaaaagtcaaatttgcttatattttggaacggagggagta 39655413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40443627 - 40443668
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||    
T  40443627 ctaaaaagtcaattttgcttatattttgatacggaggaagta 40443668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42666154 - 42666113
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  42666154 ctaaaaaatgaattttgcttatattttgatacggatggagta 42666113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15754472 - 15754432
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagt 41  Q
    |||||| ||||||||||||||||||||||||| ||| ||||    
T  15754472 ctaaaaggtgaattttgcttatattttgaaacagagagagt 15754432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 35447888 - 35447928
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || |||||||||||||||||||||| ||||||    
T  35447888 taaaaagtaaaatttgcttatattttgaaacggatggagta 35447928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 40802239 - 40802199
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || ||||||||||||| |||||||||||||||    
T  40802239 taaaaagtaaaatttgcttatatttagaaacggagggagta 40802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44838811 - 44838763
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacatttca 49  Q
    ||||||||| ||||||||||||||||  ||||||| |||||| ||||||    
T  44838811 ctaaaaagtcaattttgcttatatttaaaaacggatggagtatatttca 44838763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 61)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48908697 - 48908656
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48908697 ctaaaaagtgaattttgcttatattttgaaacggagggagta 48908656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39333393 - 39333437
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  39333393 ctaaaaagtaaattttgcttatattttgaaacggagggagtacat 39333437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48895537 - 48895493
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  48895537 ctaaaaagtgaattttgcttatattttaaaacggagggagtacat 48895493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 378791 - 378837
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  378791 ctaaaaagtgaattttgcttatattttaaaacggagggagtatattt 378837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42957937 - 42957979
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  42957937 ctaaaaaatgaattttgcttatattttgaaacggagggagtac 42957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13927432 - 13927391
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  13927432 ctaaaaagtgaatttcgcttatattttgaaacggagggagta 13927391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16607457 - 16607498
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  16607457 ctaaaaagtgaattttgcttatattttgatacggagggagta 16607498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20547861 - 20547902
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  20547861 ctaaaaagtgaattttgcttatattttgaaacggagagagta 20547902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38082551 - 38082510
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  38082551 ctaaaaagtgaattttgcttatattttgaaacggatggagta 38082510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38082617 - 38082658
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  38082617 ctaaaaagtgaattttgtttatattttgaaacggagggagta 38082658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39148792 - 39148833
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  39148792 ctaaaaagtaaattttgcttatattttgaaacggagggagta 39148833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44435277 - 44435318
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  44435277 ctaaaaagtgaaatttgcttatattttgaaacggagggagta 44435318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 44687936 - 44687895
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  44687936 taaaaagtgaattttgcttatatttagaaacggagggagtac 44687895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48895619 - 48895660
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  48895619 ctaaaaagtgaattttgcttatattttaaaacggagggagta 48895660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48909137 - 48909178
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  48909137 ctaaaaagtgaattttgcttatattttaaaacggagggagta 48909178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 378751 - 378711
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  378751 taaaaagtgaattttgcttatattttaaaacggagggagta 378711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11582786 - 11582742
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  11582786 ctaaaaaaagaattttgcttatattttgaaacggagggagtacat 11582742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 20547829 - 20547789
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  20547829 taaaaagtgaattttgcttatattttaaaacggagggagta 20547789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 35455599 - 35455559
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  35455599 taaaaagtgaattttgcttatattttaaaacggagggagta 35455559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8126167 - 8126121
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||    
T  8126167 ctaaaaagtaaaatttgcttatattttgaaacggagggagtatattt 8126121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39333327 - 39333285
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  39333327 ctaaaaaatgaattttgcttatattttaaaacggagggagtac 39333285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9019008 - 9019048
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  9019008 ctaaaaagtgaattttgcttatattttgaaac-gagggagta 9019048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13927498 - 13927539
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  13927498 ctaaaaagtgaattttgtttatattttgacacggagggagta 13927539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 28791747 - 28791788
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  28791747 taaaaagtaaaatttgcttatattttgaaacggagggagtac 28791788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33639017 - 33639058
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  33639017 ctaaaaagtgaattttgcttatatttaaaaacggagggagta 33639058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34205600 - 34205559
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  34205600 ctaaaaagtaaaatttgcttatattttgaaacggagggagta 34205559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34413224 - 34413265
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  34413224 ctaaaaaataaattttgcttatattttgaaacggagggagta 34413265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39148726 - 39148685
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  39148726 ctaaaaagtgaattttacttatattttgatacggagggagta 39148685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40326541 - 40326582
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  40326541 ctaaaaagtcaattttgcttatattttgatacggagggagta 40326582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42957871 - 42957830
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  42957871 ctaaaaagtgaattttgcttatattttaaaacggatggagta 42957830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 1126504 - 1126544
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  1126504 taaaaagtgaatcttgcttatattttaaaacggagggagta 1126544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4236617 - 4236573
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||    
T  4236617 ctaaaaagtaatttttgcttatattttgacacggagggagtacat 4236573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42606031 - 42605991
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagt 41  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  42606031 ctaaaatgtgaattttgcttatatttcgaaacggagggagt 42605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4979710 - 4979752
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| |||||||||||||||| |||||||||| |||||    
T  4979710 ctaaaaagttaattttgcttatatttagaaacggaggaagtac 4979752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17004995 - 17004949
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||||    
T  17004995 ctaaaaaatcaattttgcttatatttaaaaacggagggagtacattt 17004949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28791713 - 28791675
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggaggga 39  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  28791713 ctaaaaagtaaaatttgcttatattttgaaacggaggga 28791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32827465 - 32827423
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    ||||||||| || |||||||||||||||||| |||||||||||    
T  32827465 ctaaaaagtaaagtttgcttatattttgaaatggagggagtac 32827423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 35455666 - 35455696
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  35455666 ctaaaaagtgaattttgcttatattttgaaa 35455696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53718000 - 53718046
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacattt 47  Q
    ||||||||| || |||||||||||||||||||||| |||||| ||||    
T  53718000 ctaaaaagtaaaatttgcttatattttgaaacggatggagtatattt 53718046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7672730 - 7672689
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||| |||||||||||||||||||||||||    
T  7672730 ctaaaaagtaaaattttcttatattttgaaacggagggagta 7672689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7933621 - 7933662
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||||||||||| |||||    
T  7933621 ctaaaaagtaaaatttgcttatattttgaaacggagagagta 7933662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12569205 - 12569246
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  12569205 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 12569246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13545669 - 13545710
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  13545669 ctaaaaagtaaaatttgcttatattttaaaacggagggagta 13545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17940225 - 17940184
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  17940225 ctaaaaagtaaattttgcttatatttaaaaacggagggagta 17940184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17940282 - 17940323
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| ||||| |||||||||    
T  17940282 ctaaaaagtaaattttgcttatatttagaaacagagggagta 17940323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21831503 - 21831462
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||| || ||||||||||||||||| ||||||    
T  21831503 ctaaaaagtgaattctgtttatattttgaaacggaaggagta 21831462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26770824 - 26770865
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  26770824 ctaaaaagtaaaatttgcttatattttgaaacggatggagta 26770865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29076628 - 29076669
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| |||| ||||||||||    
T  29076628 ctaaaaagtcaattttgcttatatttagaaatggagggagta 29076669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32814731 - 32814772
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || ||||||||||||||| |||||||||||||    
T  32814731 ctaaaaagtcaaatttgcttatattttggaacggagggagta 32814772  T

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Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36934518 - 36934477
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  36934518 ctaaaacgtgaattttgcttatatcttgaaacggaaggagta 36934477  T

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Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43556906 - 43556865
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  43556906 ctaaaaagtgatttttgcttatattttaaaacggaaggagta 43556865  T

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Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44544195 - 44544154
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||    
T  44544195 ctaaaaagtcaattttgcttatattttgatacggatggagta 44544154  T

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Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 50623082 - 50623041
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagtac 43  Q
    |||||||| || |||| |||||||||||||||||||||||||    
T  50623082 taaaaagtaaaatttgtttatattttgaaacggagggagtac 50623041  T

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Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50623139 - 50623180
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | || |||||||||||||||||||||||||||||    
T  50623139 ctaaaaaataaaatttgcttatattttgaaacggagggagta 50623180  T

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Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54008310 - 54008351
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  54008310 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 54008351  T

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Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 16607390 - 16607354
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggaggg 38  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  16607390 taaaaagtgatttttgcttatattttgacacggaggg 16607354  T

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Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 19679066 - 19679106
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| || ||||||||||||| |||||||||||||||    
T  19679066 taaaaagtaaaatttgcttatatttagaaacggagggagta 19679106  T

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Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 25823636 - 25823596
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||||||||||||  ||||||| ||||||    
T  25823636 taaaaagtgaattttgcttatatttaaaaacggaaggagta 25823596  T

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Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 26043354 - 26043394
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  26043354 taaaaagtaaattttgcttatatttagaaacggatggagta 26043394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31267370 - 31267414
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacat 45  Q
    ||||||| | |||||||||||||||| ||| ||||||||||||||    
T  31267370 ctaaaaaatcaattttgcttatatttagaagcggagggagtacat 31267414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 46843685 - 46843725
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||| ||||||||||||||||  ||||||||||||||    
T  46843685 taaaaagtcaattttgcttatatttaaaaacggagggagta 46843725  T

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Target: scaffold0633 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5361 - 5320
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  5361 ctaaaaagtgaattttgcttatattttgagacggagggagta 5320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 5430 - 5469
Alignment:
Q  3 aaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  5430 aaaaggtgaattttgcttatattttgaaacggagggagta 5469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1736 - 1777
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  1736 ctaaaaagtaaattttgcttatattttgaaacggagggagta 1777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1670 - 1629
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  1670 ctaaaaaataaattttgcttatattttgaaacggagggagta 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22405 - 22446
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  22405 ctaaaaagtgaattttgcttatattttgatacggagggagta 22446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22339 - 22298
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  22339 ctaaaaagtgaatttttcttatattttgaaacggatggagta 22298  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 491886 - 491847
Alignment:
Q  2 taaaaagtgaattttgcttatattttgaaacggagggagt 41  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  491886 taaaaaatgaattttgcttatattttgaaacggagggagt 491847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17102 - 17143
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  17102 ctaaaaagtgaattttacttatattttgaaacagagggagta 17143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 67959 - 67918
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  67959 ctaaaaagtgaattttacttatattttgaaatggagggagta 67918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14136 - 14177
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  14136 ctaaaaagtaaaatttgcttatattttgaaacggatggagta 14177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11687 - 11728
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| ||||| |||||||||| |||||||||||||||    
T  11687 ctaaaaagtaaatttggcttatatttagaaacggagggagta 11728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 282 - 327
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagtacatt 46  Q
    ||||||||| || |||||||||||||||||| |||| |||||||||    
T  282 ctaaaaagtaaaatttgcttatattttgaaatggagagagtacatt 327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49700 - 49659
Alignment:
Q  1 ctaaaaagtgaattttgcttatattttgaaacggagggagta 42  Q
    ||||||||| |||||||||||||||| ||||| |||||||||    
T  49700 ctaaaaagtcaattttgcttatatttagaaacagagggagta 49659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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