View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_high_18 (Length: 389)
Name: NF19361_high_18
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 10210686 - 10211047
Alignment:
| Q |
19 |
taagatgtgtataagcacatatgtttaacaaaacacaacaataagtattacttttttaaaatatgtaagcaaggaaatagtcaatgatgtcatttagatg |
118 |
Q |
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| T |
10210686 |
taagatgtgtataagcacatatgtttaacaaaacacaaccataagtattacttttttaaaatatgtaagcaaggaaatagttaatgatttcatttagatg |
10210785 |
T |
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| Q |
119 |
gccagtaaaatatgaaaaaagaacaaacattgatatgaaaagatcagggacgaattagtttcatcttaagttcttaacttaaaagatatattgatattat |
218 |
Q |
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| T |
10210786 |
gccagtaaaatatgaaaaaagaacaaacattgatatgaaaagatcagggacgaattagtttcatcttaagttcttaacttaaaagatatattgatattat |
10210885 |
T |
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| Q |
219 |
gacaaccaa-aatcagcacaaagataatggcttcactaattgaggtatcccagtctaccaacaattaaatttcatcatcactttgactataactacactc |
317 |
Q |
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| T |
10210886 |
gacaacaaacaatcagcacaaagataatggcttcactaattgaggtatcccaatctaccaacaattaaatttcatcatcactttgactataactacactc |
10210985 |
T |
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| Q |
318 |
ttgatttcctgaaacagaagagactcataaatcctataaaatttacataaatacaacctttg |
379 |
Q |
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| T |
10210986 |
ttgatttcctgaaacagaagagactcataaatcctataaaacttacataaatgcaacctttg |
10211047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 9683529 - 9683633
Alignment:
| Q |
84 |
taagcaaggaaatagtcaatgatgtcatttagatggccagtaaaatatgaaaaaa-gaacaaacattgatatgaaaagatcagggacgaattagtttcat |
182 |
Q |
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|||||||||||||||| ||||| |||||||||| || | |||||||| | |||| || ||||||||||||| |||||| |||| || |||| ||||||| |
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| T |
9683529 |
taagcaaggaaatagttaatgaagtcatttagacggaccataaaatatcagaaaatgaccaaacattgatatcaaaagaacaggaactaattggtttcat |
9683628 |
T |
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| Q |
183 |
cttaa |
187 |
Q |
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||||| |
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| T |
9683629 |
cttaa |
9683633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10108479 - 10108439
Alignment:
| Q |
19 |
taagatgtgtataagcacatatgtttaacaaaacacaacaa |
59 |
Q |
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| T |
10108479 |
taagatgtgtataagcacttatgtttaacaaaacacaacaa |
10108439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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