View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_high_22 (Length: 361)
Name: NF19361_high_22
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_high_22 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 91 - 361
Target Start/End: Complemental strand, 4128951 - 4128681
Alignment:
| Q |
91 |
cgatctagaccgcaataccaaggacttaaaaaaggtctgtgatctcattctggactgcaataccagggttgtttgtgtctaaacaaacataagtgactgc |
190 |
Q |
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| T |
4128951 |
cgatctagaccgcaataccaaggacttaaaaaaggtctgtgatctcattctggactgcaataccagggttgtttgtgtctaaacaaacataagtgactgc |
4128852 |
T |
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| Q |
191 |
agttgatgttgcgtcaaccgcatttgacttcaactattcgcaatattaagaattggcatgttgctgcaactgtaatttaaaaccttgcactatccgtcat |
290 |
Q |
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| T |
4128851 |
agttgatgttgcgtcaaccgcatttgacttcaactatttgcaatattaagaattggcatgttgctgcaactgtaatttaaaaccttgcactatccgtcat |
4128752 |
T |
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| Q |
291 |
acaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatg |
361 |
Q |
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| T |
4128751 |
acaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatg |
4128681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 4137500 - 4137314
Alignment:
| Q |
157 |
ggttgtttgtgtctaaacaaacataagtgactgcagttgatgttgcgtcaaccgcatttgacttcaactattcgcaatattaagaattggcatgttgctg |
256 |
Q |
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| T |
4137500 |
ggttttttatgtctacgcaaacataagtgactgcagttgatgtttcatcaatcgcatttgattacagctatttgcaatattaagaatcggcatgtgactg |
4137401 |
T |
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| Q |
257 |
caactgtaatttaaaaccttgcactatccgtcatacaat--tatattatagaatgctctagttaatagttacaagatttgatgaatg |
341 |
Q |
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| T |
4137400 |
caactacaatttaaaaccttgcgctatccgttatataattatatattataacctgatctagataatagttataagatttgatgaatg |
4137314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 4142438 - 4142366
Alignment:
| Q |
289 |
atacaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatg |
361 |
Q |
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| T |
4142438 |
atacaactatattataacatgatctagataatagttacaagatttgatgaatgattagagtttctctacaatg |
4142366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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