View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_high_3 (Length: 690)
Name: NF19361_high_3
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_high_3 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 11612655 - 11613061
Alignment:
| Q |
20 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11612655 |
tcagacccatggcacaacaccattgttcaaacactgagtggcagc---aactaaaatctttgatgtatccaatgacatgaaagcctatgttattctaatg |
11612751 |
T |
|
| Q |
120 |
tagtcctgaatggatgaattttgaaagacatctgggcatgattgttacgatccttaatctatttccatgtacagaggaactaagatggctttatattact |
219 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11612752 |
taatcctgaatggatgaattttgaaagacatccgggcatgattgttatgatccttaatctatttccatgtacagaggaactaagatggctttatattact |
11612851 |
T |
|
| Q |
220 |
ctttatattatcaagcataataaatagaaattaaacatctattacaattcttagaatttgggttgaatctagcttaaccctttcggaacagttctctatt |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11612852 |
ctttatattatcaagcataataaatagaaattaaacatctattacaattcttagaatatgggttgaatctagcttaaccctttcgaaacagttctctatg |
11612951 |
T |
|
| Q |
320 |
gttagggatacttcccgcttagaaagtcattttcagaacgtatctcatctaacgagactctcagcagatttccttttgcttaggaccgaacatttgaacg |
419 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |
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| T |
11612952 |
gttagggacacttcccgcttagaaagtcattttcagaacgtatctcatctaacgagactctcaacagatttccttttgcttaggaccgaacattcgaatg |
11613051 |
T |
|
| Q |
420 |
gtgactttca |
429 |
Q |
| |
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|||||||||| |
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| T |
11613052 |
gtgactttca |
11613061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 443 - 676
Target Start/End: Original strand, 11613201 - 11613431
Alignment:
| Q |
443 |
aattatttaaatttactaccattttctacaagattaaattaccaacttggttcacaggatgaaatttcataaactgtatcatcaaccaacacatcttgct |
542 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11613201 |
aattatttaaatttactaccattttctacaagattaaattaccaacttggttcactggatgaaatttcataaactgtatcatcaaccaacacatcttgct |
11613300 |
T |
|
| Q |
543 |
ccaagcattgagaaataacctagtttccttaaaaaggtttgtgtcttgagtattagcaatggaaaaaatagaagtgaaggggtacatatcccttatatag |
642 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11613301 |
ccaagcattgaga---aaactagtttccttaaaaaggtttgtgtcttgagtattagcaatggaaaaaatagaagtgaaggggtacatatcccttatatag |
11613397 |
T |
|
| Q |
643 |
gtttactcaaatcgactttacgcgcttatagtat |
676 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
11613398 |
gtttactcaaatcgactttccgcgcttatagtat |
11613431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 40834 - 40654
Alignment:
| Q |
20 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
40834 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggc---aactaaaatgtttgttgtatctaatgatatgaaagcctatgttattctaatg |
40738 |
T |
|
| Q |
120 |
tagtcctgaatggatgaattttgaaagacatctgggcatgattgttacgatccttaatctatttccatgtacagaggaactaag |
203 |
Q |
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|| || |||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
40737 |
taatcatgaatggatgaattttgaaagatatctgagcatgattgttaagatccttaatttatttccatgtacagaggaactaag |
40654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 34201 - 34023
Alignment:
| Q |
20 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatg |
119 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34201 |
tcagacccatggcacaacatcattgttcaaacactgagtggcggc---aactaaaatgtttgttgtatccaatgacatgaaagcctatgttattctaatg |
34105 |
T |
|
| Q |
120 |
tagtcctgaatggatgaattttgaaagacatctgggcatgattgttacgatccttaatctatttccatgtacagaggaacta |
201 |
Q |
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|| || |||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||| ||||||||| |
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| T |
34104 |
taatcatgaatggatgaattttgaaagatatctgagcatgattgttaagatccttaatttatttccatgtacggaggaacta |
34023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 27446524 - 27446704
Alignment:
| Q |
20 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
27446524 |
tcagacccatggcacaacaccattgttcaaacactgagtggcg---gcaactaaaatgtttgttgtatctaatgatatgaaagcctatgttattctaatg |
27446620 |
T |
|
| Q |
120 |
tagtcctgaatggatgaattttgaaagacatctgggcatgattgttacgatccttaatctatttccatgtacagaggaactaag |
203 |
Q |
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|| || |||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
27446621 |
taatcatgaatggatgaattttgaaagatatctgagcatgattgttaagatccttaatttatttccatgtacagaggaactaag |
27446704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 14454968 - 14454790
Alignment:
| Q |
20 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
14454968 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggc---aactaaaatgtttgttgtatccaatgacctgaaagcctatgttattctaatg |
14454872 |
T |
|
| Q |
120 |
tagtcctgaatggatgaattttgaaagacatctgggcatgattgttacgatccttaatctatttccatgtacagaggaacta |
201 |
Q |
| |
|
|| || |||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||| |||||| |
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|
| T |
14454871 |
taatcatgaatggatgaattttgaaagatatctgagcatgattgttaagatcattaatctatttccatgtacagaagaacta |
14454790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 8e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 13764252 - 13764432
Alignment:
| Q |
20 |
tcagacccatggcacaacaccattgttcaaacactgagtggcggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatg |
119 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13764252 |
tcagacccatggcaaaacaccattgttcaaacactgagtggcg---gcaactaaagtgtttgttgtatccaatgacatgaaagcctatgttattctaatg |
13764348 |
T |
|
| Q |
120 |
tagtcctgaatggatgaattttgaaagacatctgggcatgattgttacgatccttaatctatttccatgtacagaggaactaag |
203 |
Q |
| |
|
|| || |||||||||||||||||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||| |||| |
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| T |
13764349 |
taatcatgaatggatgaattttgaaagatatctgagcatgattgttaagatcctgaatttatttccatgtacagaggaattaag |
13764432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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