View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_high_9 (Length: 505)
Name: NF19361_high_9
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 10 - 495
Target Start/End: Complemental strand, 48403696 - 48403207
Alignment:
| Q |
10 |
aatgagacggttgatgctcaatcctttgagtggcaaacagcacggaatgacggaaagtaagtcaacaaaccagctagcaagcaccgtgaacaggaacaac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48403696 |
aatgagacggttgatgctcaatcctttgagtggcaaacagcacggaatgacggaaagtaagtcaacaaaccagctagcaagcaccgtgaacaggaacaac |
48403597 |
T |
|
| Q |
110 |
aaattgggtcaagcaatatgctgggaggtacaaatgcagctttctctaaccagcataatagagttggcattgacatgtttattagagatgaaatgagagc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48403596 |
aaattgggtcaagcaatatgctgggaggtacaaatgcagctttctctaaccagcataatagagttggcattgacatgtttattagagatgaaatgagagc |
48403497 |
T |
|
| Q |
210 |
atttgtacatacacataggagaagctttaggccttttgtcggcgttaaattgggtccatgagtttcaactcaggcttgatgattttgagcttgattcaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48403496 |
atttgtacatacacataggagaagctttaggccttttgtcggcgttaaattgggtccatgagcttcaactcaggcttgatgattttgagcttgattcaaa |
48403397 |
T |
|
| Q |
310 |
gcg---agtggttcaattttcgtcacccaactttgatgtcattgaa-tcgaggacataattgataattgcagagctctcttcacacaattttatgtaaat |
405 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48403396 |
gcgagtagtggttcaattttcgtcacccaactttgatgtcattgaattcgaggacataattgataattgcagagctctcttcacacaattttatgtaaat |
48403297 |
T |
|
| Q |
406 |
tccagtgttgagtttgtgcggagataagcaaacgaggcatctcatacattagcaaaggaagccgcattattagttaatttccagatattg |
495 |
Q |
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| T |
48403296 |
tccagtgttgagtttgtgcggagataagcaaacgaggcatctcatacgttagcaaaggaagccgcattattagctaatttccagatattg |
48403207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 20426016 - 20426049
Alignment:
| Q |
409 |
agtgttgagtttgtgcggagataagcaaacgagg |
442 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
20426016 |
agtgttgagtttgtgcggagacaagcaaacgagg |
20426049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 33906743 - 33906695
Alignment:
| Q |
394 |
ttttatgtaaattccagtgttgagtttgtgcggagataagcaaacgagg |
442 |
Q |
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| T |
33906743 |
ttttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgagg |
33906695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 221 - 460
Target Start/End: Complemental strand, 25537710 - 25537467
Alignment:
| Q |
221 |
cacataggagaagctttaggccttttgtcggcgttaaattgggtccatgagtttcaactcaggcttgatgattttgagcttgattcaaagcg---agtgg |
317 |
Q |
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||||| |||||||| ||||| || |||||||| |||||||||||||||||| |||| || | | || ||| ||| || |||||||||| | ||||| |
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| T |
25537710 |
cacattggagaagcattaggactgttgtcggcattaaattgggtccatgagcttcagctaggacctgttgactttaagtttgattcaaaacatgtagtgg |
25537611 |
T |
|
| Q |
318 |
ttcaattttcgtcacccaactttgatgtcattgaatcgagg-acataattgataattgcagagctctcttcacacaattttatgtaaattccagtgttga |
416 |
Q |
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||||||| |||||||||| | ||||| | ||||| ||| ||||||||||||| || |||| ||| ||||||||||||||| |||| || |||||||| |
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| T |
25537610 |
atcaatttccgtcacccaaatcagatgttagtgaattcagggacataattgataactgtagagttctattcacacaattttatttaaactctagtgttga |
25537511 |
T |
|
| Q |
417 |
gtttgtgcggagataagcaaacgaggcatctcatacattagcaa |
460 |
Q |
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| T |
25537510 |
gtttgtgcggagacaagcaaatgaggcagctcatactttagcaa |
25537467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 5827636 - 5827691
Alignment:
| Q |
409 |
agtgttgagtttgtgcggagataagcaaacgaggcatctcatacattagcaaagga |
464 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||||| |
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| T |
5827636 |
agtgttgagtttgtaaggagacaagcaaatgaggcagctcatacattagctaagga |
5827691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 5954097 - 5954027
Alignment:
| Q |
359 |
acataattgataattgcagagctctcttcacacaattttatgtaaattccagtgttgagtttgtgcggaga |
429 |
Q |
| |
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|||||||||||||||| | | ||||||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
5954097 |
acataattgataattgtaaatctctcttttgacaattttataaaaattctcgtgttgagtttgtgcggaga |
5954027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 593736 - 593784
Alignment:
| Q |
394 |
ttttatgtaaattccagtgttgagtttgtgcggagataagcaaacgagg |
442 |
Q |
| |
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||||||||||| || |||| ||||||||||||||| |||||||||||| |
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| T |
593736 |
ttttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgagg |
593784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 5849177 - 5849245
Alignment:
| Q |
390 |
acaattttatgtaaattccagtgttgagtttgtgcggagataagcaaacgaggcatctcatacattagc |
458 |
Q |
| |
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||||| |||||| || || ||||||||||||||| ||||| || |||| |||||| |||||| |||||| |
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| T |
5849177 |
acaatgttatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggcagctcatagattagc |
5849245 |
T |
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