View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19361_low_1 (Length: 855)
Name: NF19361_low_1
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 17 - 675
Target Start/End: Original strand, 16509932 - 16510589
Alignment:
| Q |
17 |
agaagattctgattccgaatctcgaggatggtgagtttcctgttgagcctgggtggtcattgttgggaaggaagattgagattgctacttctactgctaa |
116 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16509932 |
agaagatccagattccgaatcttgaggatggtgagtttcctgttgagcctgggtggtcattgttgggaaggaagattgagattgctacttctactgctaa |
16510031 |
T |
|
| Q |
117 |
aggagtgagaagattggttgataatgagattatttattttgattttccgaatccgcatacgtcgtataagtttcaatggattgttcgtgtctcgaccaaa |
216 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
16510032 |
aggagtgagaagattggtggataatgagattatttattttgattttccgaatccgcatacgtcgtataagtttcaatggatcgttcgtgtctccacaaag |
16510131 |
T |
|
| Q |
217 |
cgttctggagtggtactaattttatccttaaaaagttacatttttgttattgttagagtttaaagtatgttattttcttgattgcaatgtttagaattta |
316 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16510132 |
cgttctggagtggtatgaattttatccataaaaagttacatttttgttatggttaaagtttaaagtatgttattttcttgattgcaatgtttagaattta |
16510231 |
T |
|
| Q |
317 |
aagtattttattttattgattgcaatgtttagaatgcaatgtgagattgttttgatgtttttgttggaaggaattgaaagtg--atatttttgttatctt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
16510232 |
aagtattttattttattgattgcaatgtttaaaatgcaatgtgaaattattttgatgtttttgttggaaggaattgaaagtgatatatttttgttatgtt |
16510331 |
T |
|
| Q |
415 |
ggtgtgtttgactctaaaggttgggaggctgccaatggaatgggctaaatctgtgattcctcttgtgcaatctggaaatgttaaggttcgaggacgatgc |
514 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16510332 |
ggtgtgtttaactctaaaggttgggaggctgccaatggaatgggctaaatctgtgattccccttgtgcaatctggaaatgttaaggttcgaggacgatgc |
16510431 |
T |
|
| Q |
515 |
attgctacaccgtataagcttgaaatgatgcaagaaataatgttgttagtaaggtataagtaatttctggtttatttggttagtttagttggaatgatat |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
16510432 |
attgctacaccgtataagcttgaaatgatgcaggaaataatgttgttagtgaggtata---aatttctggtttattttgtcagtttagttggaatgatat |
16510528 |
T |
|
| Q |
615 |
tgatgaaagctttcacttttatttggttttttgtgttctattggatatttcatctgaattt |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
16510529 |
cgatgaaagctttcacttttatttggttttttgtgttcttttggatatttcatttgaattt |
16510589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 741 - 795
Target Start/End: Original strand, 16510646 - 16510701
Alignment:
| Q |
741 |
ttaaatgtaacaaacttt-gagaaaattaaggatttaaaaaatcatagctggttaa |
795 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
16510646 |
ttaaatgaaacaaacttttgagaaatttaaggatttaaaaaatcatagctagttaa |
16510701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University