View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19361_low_11 (Length: 483)

Name: NF19361_low_11
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19361_low_11
NF19361_low_11
[»] scaffold0016 (1 HSPs)
scaffold0016 (73-178)||(47634-47739)
[»] chr5 (11 HSPs)
chr5 (1-62)||(6168762-6168823)
chr5 (1-65)||(21369266-21369330)
chr5 (1-62)||(18003853-18003914)
chr5 (1-62)||(22474021-22474082)
chr5 (1-63)||(31758863-31758925)
chr5 (3-62)||(8408787-8408846)
chr5 (8-62)||(8694479-8694533)
chr5 (1-55)||(34399568-34399622)
chr5 (1-62)||(32146910-32146971)
chr5 (1-62)||(38007774-38007835)
chr5 (1-45)||(40680323-40680367)
[»] chr2 (11 HSPs)
chr2 (1-62)||(33618193-33618254)
chr2 (1-62)||(18468937-18468998)
chr2 (1-62)||(18469024-18469085)
chr2 (1-62)||(27692685-27692746)
chr2 (1-61)||(42263012-42263072)
chr2 (1-63)||(22352438-22352500)
chr2 (3-68)||(3167313-3167378)
chr2 (1-62)||(42792737-42792798)
chr2 (1-57)||(3094922-3094978)
chr2 (1-62)||(3095004-3095065)
chr2 (1-45)||(3167268-3167312)
[»] chr1 (14 HSPs)
chr1 (1-62)||(35838714-35838775)
chr1 (1-62)||(49980677-49980738)
chr1 (1-67)||(41621281-41621347)
chr1 (1-62)||(13911361-13911422)
chr1 (3-62)||(24286761-24286820)
chr1 (8-62)||(17012971-17013025)
chr1 (3-65)||(24286850-24286912)
chr1 (1-62)||(18023696-18023757)
chr1 (1-62)||(35838801-35838862)
chr1 (10-63)||(40094420-40094473)
chr1 (1-52)||(42914542-42914593)
chr1 (1-62)||(38149447-38149508)
chr1 (2-62)||(16426992-16427052)
chr1 (1-45)||(42788411-42788455)
[»] chr8 (9 HSPs)
chr8 (1-63)||(1256173-1256235)
chr8 (1-67)||(42666108-42666174)
chr8 (1-62)||(8769637-8769698)
chr8 (1-62)||(11295915-11295976)
chr8 (8-63)||(4786750-4786805)
chr8 (1-55)||(12955824-12955878)
chr8 (1-51)||(15754518-15754568)
chr8 (1-62)||(30538052-30538113)
chr8 (10-62)||(13832469-13832521)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-62)||(22298-22359)
[»] chr6 (6 HSPs)
chr6 (1-62)||(2157640-2157701)
chr6 (1-62)||(25371087-25371148)
chr6 (1-69)||(12349804-12349872)
chr6 (1-55)||(10118701-10118755)
chr6 (1-62)||(12349898-12349959)
chr6 (21-62)||(12291048-12291089)
[»] chr4 (11 HSPs)
chr4 (1-62)||(2994804-2994865)
chr4 (1-62)||(31808405-31808466)
chr4 (1-62)||(48796172-48796233)
chr4 (1-63)||(48796258-48796320)
chr4 (1-62)||(171211-171272)
chr4 (1-62)||(7695125-7695186)
chr4 (1-62)||(31808318-31808379)
chr4 (1-57)||(15641224-15641280)
chr4 (8-62)||(51545476-51545530)
chr4 (1-62)||(11347115-11347176)
chr4 (1-62)||(36469867-36469928)
[»] chr3 (10 HSPs)
chr3 (1-62)||(34413204-34413265)
chr3 (1-62)||(38082510-38082571)
chr3 (8-63)||(42957924-42957979)
chr3 (1-62)||(21831360-21831421)
chr3 (1-62)||(42957830-42957891)
chr3 (1-62)||(47900332-47900393)
chr3 (1-62)||(50623119-50623180)
chr3 (1-62)||(54680572-54680633)
chr3 (2-62)||(25245232-25245292)
chr3 (3-63)||(39333285-39333345)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-61)||(491847-491907)
[»] chr7 (9 HSPs)
chr7 (1-55)||(5212058-5212112)
chr7 (1-62)||(2927182-2927243)
chr7 (1-62)||(48339050-48339111)
chr7 (1-36)||(1706916-1706951)
chr7 (12-65)||(16810907-16810960)
chr7 (1-62)||(24043075-24043136)
chr7 (1-62)||(34000945-34001006)
chr7 (1-69)||(24043162-24043230)
chr7 (1-61)||(43067021-43067081)
[»] scaffold0110 (2 HSPs)
scaffold0110 (1-45)||(10170-10214)
scaffold0110 (1-45)||(17907-17951)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-45)||(66003-66047)


Alignment Details
Target: scaffold0016 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 47634 - 47739
Alignment:
Q  73 attcacatttgtaaaacatatgttcaaaaagggtttcttttgtttcatttaactttcccatattttaaatataaaaggagaaacttcacata-tttattc 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||| |||||||||||||| |||||||| ||||||| |||||||    
T  47634 attcacatttgtaaaacatatgttcaaaatgggtttcttttgttt-ttttagctttcccaaattttaaatataaatggagaaacctcacatattttattc 47732  T
Q  172 ctacctg 178  Q
    |||||||    
T  47733 ctacctg 47739  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6168762 - 6168823
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| ||||||||||||||||    
T  6168762 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgaaacggatggagta 6168823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21369330 - 21369266
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacat 65  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| |||||||||||||||||||    
T  21369330 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagtacat 21369266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18003914 - 18003853
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  18003914 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 18003853  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22474021 - 22474082
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||  |||||||| ||||||    
T  22474021 acatcattaaatgaatgaatctaaaaaatgaattttgcttatatttagaaacggagggagta 22474082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31758925 - 31758863
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    |||||| |||||||||| | |||||||||||||||||| ||||||  |||| |||||||||||    
T  31758925 acatcattaaatgaatgaacctaaaaaatgaattttgcttatatttagaaatggatggagtac 31758863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 8408846 - 8408787
Alignment:
Q  3 atcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||| |||||||||| | ||||||||| |||||||| ||||||  |||||||||||||||    
T  8408846 atcattaaatgaatgaacctaaaaaatcaattttgcttatatttagaaacggatggagta 8408787  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 8694533 - 8694479
Alignment:
Q  8 taaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||||||| ||||||||| | |||||||| ||||||  |||||||||||||||    
T  8694533 taaatgaatgaatctaaaaagtcaattttgcttatatttagaaacggatggagta 8694479  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34399622 - 34399568
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacgga 55  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| | |||||||    
T  34399622 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttaaaacgga 34399568  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32146910 - 32146971
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||||| |||||| | ||||||  |||||||||||||||    
T  32146910 acatcattaaatgaatgaacctaaaaaatcaattttacttatatttagaaacggatggagta 32146971  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38007774 - 38007835
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| | |||||||| ||||||  |||||||||||||||    
T  38007774 acatcattaaatgaatgaacctaaaaattaaattttgcttatatttagaaacggatggagta 38007835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40680323 - 40680367
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatatt 45  Q
    |||||| |||||||||| | |||||||||||||||||| ||||||    
T  40680323 acatcattaaatgaatgaacctaaaaaatgaattttgcttatatt 40680367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33618254 - 33618193
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| ||||||||||||||||    
T  33618254 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgaaacggatggagta 33618193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18468998 - 18468937
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  18468998 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 18468937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18469024 - 18469085
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  18469024 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 18469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27692685 - 27692746
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  27692685 acatcactaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 27692746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42263072 - 42263012
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagt 61  Q
    |||||| |||||||||| || ||||||||||||||||| |||||| ||||||||| |||||    
T  42263072 acatcattaaatgaatgaatttaaaaaatgaattttgcttatattttgaaacggagggagt 42263012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22352500 - 22352438
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    |||||| |||||||||| | ||||| | |||||||||| |||||| |||||||||||||||||    
T  22352500 acatcattaaatgaatgaacctaaatagtgaattttgcttatattttgaaacggatggagtac 22352438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 3167313 - 3167378
Alignment:
Q  3 atcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacattat 68  Q
    |||| |||||||||| ||||||||||| |||||||| ||||||  |||| ||| ||||||||||||    
T  3167313 atcattaaatgaatgaatctaaaaaatcaattttgcatatatttagaaatggagggagtacattat 3167378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42792737 - 42792798
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| || ||||||| | |||||||||||||||||| |||||| | ||||||||||||||    
T  42792737 acatcattagatgaatgaacctaaaaaatgaattttgcttatattttaaaacggatggagta 42792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3094978 - 3094922
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatg 57  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| |||||||||||    
T  3094978 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatg 3094922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3095004 - 3095065
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| ||||| |||| | |||||||||||||||||  |||||| ||||||||| ||||||    
T  3095004 acatcattaaatcaatgaacctaaaaaatgaattttgattatattttgaaacggagggagta 3095065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3167312 - 3167268
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatatt 45  Q
    |||||| |||||||||| ||||||||||| |||||||| ||||||    
T  3167312 acatcattaaatgaatgaatctaaaaaatcaattttgcttatatt 3167268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35838775 - 35838714
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||    
T  35838775 acatcattaaatgaatgaatctaaaaaatgaattttgcttatattttgaaacggagggagta 35838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49980677 - 49980738
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| ||||||||||||||||    
T  49980677 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgaaacggatggagta 49980738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41621347 - 41621281
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacatta 67  Q
    |||||| |||||||||| ||||||||||| |||||||| |||||| ||||||||||| |||| ||||    
T  41621347 acatcattaaatgaatgaatctaaaaaataaattttgcttatattttgaaacggatgaagtatatta 41621281  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13911361 - 13911422
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  13911361 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 13911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 24286820 - 24286761
Alignment:
Q  3 atcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  24286820 atcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 24286761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 17012971 - 17013025
Alignment:
Q  8 taaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||||||| | |||||||||||||||||| |||||| ||||||||| ||||||    
T  17012971 taaatgaatgaacctaaaaaatgaattttgcttatattttgaaacggacggagta 17013025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 24286850 - 24286912
Alignment:
Q  3 atcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacat 65  Q
    |||| |||||||||  | |||||||||||||||||| |||||| ||||||||| |||||||||    
T  24286850 atcattaaatgaataaacctaaaaaatgaattttgcttatattttgaaacggagggagtacat 24286912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18023696 - 18023757
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||| ||||||||||||    
T  18023696 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgatacggatggagta 18023757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35838801 - 35838862
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| ||||| |||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  35838801 acatcattaaataaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 35838862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 40094420 - 40094473
Alignment:
Q  10 aatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    |||||||| |||||||||||||||||||| ||||||  |||||||| |||||||    
T  40094420 aatgaatgaatctaaaaaatgaattttgcttatatttagaaacggagggagtac 40094473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42914593 - 42914542
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaac 52  Q
    |||||| |||||||||| |||||||||||||||||||  |||||| ||||||    
T  42914593 acatcattaaatgaatgaatctaaaaaatgaattttgtttatattttgaaac 42914542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38149447 - 38149508
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| |  ||||||||||||||||| |||||| | ||||||| ||||||    
T  38149447 acatcattaaatgaatgaacttaaaaaatgaattttgcttatattttaaaacggagggagta 38149508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 16426992 - 16427052
Alignment:
Q  2 catcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    ||||| |||||||||| ||||||||||| |||||||| ||||||   ||||||| ||||||    
T  16426992 catcattaaatgaatgaatctaaaaaatcaattttgcttatatttaaaaacggagggagta 16427052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42788411 - 42788455
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatatt 45  Q
    |||||| |||||||||| ||||||||||| |||||||| ||||||    
T  42788411 acatcattaaatgaatgaatctaaaaaatcaattttgcttatatt 42788455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1256173 - 1256235
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| ||||||||| |||||||    
T  1256173 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgaaacggaaggagtac 1256235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42666174 - 42666108
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacatta 67  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| ||| |||||||||||| ||||    
T  42666174 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgatacggatggagtatatta 42666108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8769698 - 8769637
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  8769698 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 8769637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11295976 - 11295915
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  11295976 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 11295915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 4786750 - 4786805
Alignment:
Q  8 taaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    |||||||||| | ||||||| |||||||||| |||||| |||||||||||||||||    
T  4786750 taaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagtac 4786805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12955878 - 12955824
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacgga 55  Q
    |||||| ||||| |||| | |||||||||||||||||| |||||| |||||||||    
T  12955878 acatcattaaataaatgaacctaaaaaatgaattttgcttatattttgaaacgga 12955824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15754518 - 15754568
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaa 51  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| |||||    
T  15754518 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgaaa 15754568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30538113 - 30538052
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| ||||| |||| ||||||||||| |||||| | ||||||  |||||||||||||||    
T  30538113 acatcattaaattaatgaatctaaaaaattaattttacttatatttagaaacggatggagta 30538052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 13832521 - 13832469
Alignment:
Q  10 aatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||||| ||||||||||| |||||| | |||||| ||||||||| ||||||    
T  13832521 aatgaatgaatctaaaaaataaattttacttatattttgaaacggagggagta 13832469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22359 - 22298
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| ||||||||| |||||||| | |||||| ||||||||||||||||    
T  22359 acatcattaaatgaatgaatctaaaaagtgaatttttcttatattttgaaacggatggagta 22298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2157640 - 2157701
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  2157640 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 2157701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25371087 - 25371148
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  25371087 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 25371148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12349872 - 12349804
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacattatt 69  Q
    |||||| |||||||||  | ||||||| |||||||||| |||||| |||||||||||||||| ||||||    
T  12349872 acatcattaaatgaattaacctaaaaagtgaattttgcttatattttgaaacggatggagtatattatt 12349804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10118701 - 10118755
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacgga 55  Q
    |||||| ||||||||||  ||||||||||||||||||| |||||| |||||||||    
T  10118701 acatcattaaatgaatgactctaaaaaatgaattttgcttatattttgaaacgga 10118755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12349898 - 12349959
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| ||||||||| | |||||| | |||||| ||||||||||||||||    
T  12349898 acatcattaaatgaatgaatctaaaaagtaaattttacttatattttgaaacggatggagta 12349959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 12291048 - 12291089
Alignment:
Q  21 ctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||||||||||||||| |||||| ||||||||| ||||||    
T  12291048 ctaaaaaatgaattttgcttatattttgaaacggagggagta 12291089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2994804 - 2994865
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| ||||||||| ||||||    
T  2994804 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgaaacggagggagta 2994865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31808405 - 31808466
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| ||||||||||| |||||||| |||||| | ||||||||||||||    
T  31808405 acatcattaaatgaatgaatctaaaaaataaattttgcttatattttaaaacggatggagta 31808466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48796233 - 48796172
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| | ||||||||||||||    
T  48796233 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttaaaacggatggagta 48796172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48796258 - 48796320
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    |||||| ||||| |||| | |||||||||||||||||| |||||| ||||||||| |||||||    
T  48796258 acatcattaaattaatgaacctaaaaaatgaattttgcttatattttgaaacggagggagtac 48796320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 171211 - 171272
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| ||| ||||| ||||||    
T  171211 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttgagacggagggagta 171272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7695186 - 7695125
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| |  |||||| |||||||||| |||||| ||||||||||||||||    
T  7695186 acatcattaaatgaatgaacataaaaagtgaattttgcttatattttgaaacggatggagta 7695125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31808379 - 31808318
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| | ||||||||||||||    
T  31808379 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttaaaacggatggagta 31808318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15641280 - 15641224
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatg 57  Q
    |||||| |||||||||| |  ||||||||||||||||| |||||| |||||||||||    
T  15641280 acatcattaaatgaatgaacttaaaaaatgaattttgcttatattttgaaacggatg 15641224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 51545476 - 51545530
Alignment:
Q  8 taaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||||||| | |||||||||||||||||| |||||| || |||||| ||||||    
T  51545476 taaatgaatgaacctaaaaaatgaattttgcttatattttggaacggagggagta 51545530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11347176 - 11347115
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||||| |||||||| ||||||   ||||||||||||||    
T  11347176 acatcattaaatgaatgaacctaaaaaataaattttgcttatatttaaaaacggatggagta 11347115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36469928 - 36469867
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| ||||||||||||| ||||||  |||||   ||||||||||||||    
T  36469928 acatcattaaatgaatggatctaaaaaatgagttttgctcatatttaaaaacggatggagta 36469867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34413204 - 34413265
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| ||||||||||| |||||||| |||||| ||||||||| ||||||    
T  34413204 acatcattaaatgaatgaatctaaaaaataaattttgcttatattttgaaacggagggagta 34413265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38082571 - 38082510
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||    
T  38082571 acatcattaaatgaatgaacctaaaaagtgaattttgcttatattttgaaacggatggagta 38082510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 42957924 - 42957979
Alignment:
Q  8 taaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    ||||| |||| | |||||||||||||||||| |||||| ||||||||| |||||||    
T  42957924 taaataaatgaacctaaaaaatgaattttgcttatattttgaaacggagggagtac 42957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21831421 - 21831360
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||| ||  |||||| ||||||||| ||||||    
T  21831421 acatcattaaatgaatgaacctaaaaaatgaattctgtttatattttgaaacggaaggagta 21831360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42957891 - 42957830
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| | |||||||| | ||||||| |||||||||| |||||| | ||||||||||||||    
T  42957891 acatcattgaatgaatgaacctaaaaagtgaattttgcttatattttaaaacggatggagta 42957830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47900332 - 47900393
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||  | ||||| |||||| ||||||||||||||||    
T  47900332 acatcattaaatgaatgaacctaaaaaatagaatttgcttatattttgaaacggatggagta 47900393  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50623119 - 50623180
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| ||| |||||| ||||||||||| || ||||| |||||| ||||||||| ||||||    
T  50623119 acatcattaattgaatgaatctaaaaaataaaatttgcttatattttgaaacggagggagta 50623180  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54680572 - 54680633
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| ||| |||||| | ||||||||| || ||||| |||||| ||||||||||||||||    
T  54680572 acatcattaattgaatgaacctaaaaaataaaatttgcttatattttgaaacggatggagta 54680633  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 25245232 - 25245292
Alignment:
Q  2 catcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    ||||| |||||||||| ||||||||| | |||||| | ||||||  |||||||||||||||    
T  25245232 catcattaaatgaatgaatctaaaaagtcaattttacttatatttagaaacggatggagta 25245292  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 39333345 - 39333285
Alignment:
Q  3 atcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtac 63  Q
    |||| ||||| |||| | |||||||||||||||||| |||||| | ||||||| |||||||    
T  39333345 atcattaaataaatgaacctaaaaaatgaattttgcttatattttaaaacggagggagtac 39333285  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 491907 - 491847
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagt 61  Q
    |||||| |||||||||| || ||||||||||||||||| |||||| ||||||||| |||||    
T  491907 acatcattaaatgaatgaatttaaaaaatgaattttgcttatattttgaaacggagggagt 491847  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5212112 - 5212058
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacgga 55  Q
    |||||| |||||||||| |||||||||||||||||||  |||||| |||||||||    
T  5212112 acatcattaaatgaatgaatctaaaaaatgaattttggttatattttgaaacgga 5212058  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2927243 - 2927182
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||||| |||||| | ||||||| ||||||    
T  2927243 acatcattaaatgaatgaacctaaaaaatgaattttgcttatattttaaaacggagggagta 2927182  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48339050 - 48339111
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | ||||||| |||||||||| |||||| | ||||||||||||||    
T  48339050 acatcattaaatgaatgaacctaaaaattgaattttgcttatattttaaaacggatggagta 48339111  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1706916 - 1706951
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaatttt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  1706916 acatcattaaatgaatgtatctaaaaaatgaatttt 1706951  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 16810907 - 16810960
Alignment:
Q  12 tgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacat 65  Q
    |||||| | |||||||||||||||||| |||||| | ||||||| |||||||||    
T  16810907 tgaatgaacctaaaaaatgaattttgcttatattttaaaacggagggagtacat 16810960  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24043136 - 24043075
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||| | |||||  ||||||||| ||||||    
T  24043136 acatcattaaatgaatgaacctaaaaaatgaatttttcttatatgttgaaacggagggagta 24043075  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34001006 - 34000945
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagta 62  Q
    |||||| |||||||||| | |||||||||||||||| | |||||| ||||| ||| ||||||    
T  34001006 acatcattaaatgaatgaacctaaaaaatgaatttttcttatattttgaaatggagggagta 34000945  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24043162 - 24043230
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagtacattatt 69  Q
    |||||| |||||||||| | |||||||  ||||||||| |||||| | |||||||  ||||||||||||    
T  24043162 acatcattaaatgaatgaacctaaaaagagaattttgcttatattttaaaacggagagagtacattatt 24043230  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 43067081 - 43067021
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatattgtgaaacggatggagt 61  Q
    |||||| ||| |||||| | ||||||| | |||||||| |||||| |||||||||||||||    
T  43067081 acatcattaattgaatgaacctaaaaagtaaattttgcttatattttgaaacggatggagt 43067021  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10170 - 10214
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatatt 45  Q
    |||||| |||||||||| ||||||||||| |||||||| ||||||    
T  10170 acatcattaaatgaatgaatctaaaaaattaattttgcttatatt 10214  T

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Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17907 - 17951
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatatt 45  Q
    |||||| |||||||||| ||||||||||| |||||||| ||||||    
T  17907 acatcattaaatgaatgaatctaaaaaattaattttgcttatatt 17951  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 66003 - 66047
Alignment:
Q  1 acatcagtaaatgaatgtatctaaaaaatgaattttgcctatatt 45  Q
    |||||| |||||||||| ||||||||||| |||||||| ||||||    
T  66003 acatcattaaatgaatgaatctaaaaaatcaattttgcttatatt 66047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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