View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_12 (Length: 468)
Name: NF19361_low_12
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 106 - 453
Target Start/End: Complemental strand, 38899478 - 38899131
Alignment:
| Q |
106 |
atatacaattaaatgcaacataaaaaccgatagatcgtttttccgttaatagcactaatgacgttattaatcaagatcttgtaagaatttcaactatatg |
205 |
Q |
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| T |
38899478 |
atatacaattaaatgcaacataaaaaccgatagatcgtttttccgttaatagcactaatgacgttattaatcaagatcttgtaagaatttcaactatata |
38899379 |
T |
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| Q |
206 |
ttgatcaagatgccagagcctttagccacggacaacaaatcagaaaaggatataaatttccattgatttactttagaaaatatttgattgataaatgtaa |
305 |
Q |
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| T |
38899378 |
ttgatcaagatgccagagcctttagccacggacaacaaatcagaaaaggttacaaatttccattgttttactttagaaaatatttgattgataaatgtaa |
38899279 |
T |
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| Q |
306 |
tgttaaacaatgatttaaaaaccaactcgaaatagttcattgttacatgctgctattaaccggcatttatagtgaaatctagttggtggaagtgttggca |
405 |
Q |
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| T |
38899278 |
tgttaaacaatgatttaaaaaccaactcgaaatagttcattgttacatgctgctattaaccggcatttatagtgaaatctagttggtggaagtgttggca |
38899179 |
T |
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| Q |
406 |
tgagaacaagtatgtggtttattttaagtccttggcaaccatgtttct |
453 |
Q |
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| T |
38899178 |
tgagaacaagtatgtggtttattttaagtccttggcaaccatgtttct |
38899131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 38899842 - 38899812
Alignment:
| Q |
23 |
aatccacaacaattataacaatatttgacac |
53 |
Q |
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| T |
38899842 |
aatccacaacaattataacaatatttgacac |
38899812 |
T |
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