View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19361_low_13 (Length: 450)

Name: NF19361_low_13
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19361_low_13
NF19361_low_13
[»] chr1 (10 HSPs)
chr1 (176-441)||(44843422-44843687)
chr1 (1-73)||(44845912-44845984)
chr1 (119-164)||(44845824-44845869)
chr1 (274-334)||(45926248-45926308)
chr1 (283-336)||(12320277-12320330)
chr1 (291-336)||(18604850-18604895)
chr1 (283-326)||(30159015-30159058)
chr1 (278-326)||(4490217-4490265)
chr1 (256-332)||(15941563-15941639)
chr1 (278-326)||(46674746-46674794)
[»] chr2 (11 HSPs)
chr2 (132-336)||(43652923-43653126)
chr2 (1-73)||(43653182-43653254)
chr2 (257-326)||(17435357-17435426)
chr2 (274-327)||(35006456-35006509)
chr2 (278-326)||(41568782-41568830)
chr2 (275-326)||(25336527-25336578)
chr2 (256-332)||(1520938-1521014)
chr2 (256-332)||(10639456-10639532)
chr2 (278-326)||(12242745-12242793)
chr2 (278-326)||(14287527-14287575)
chr2 (278-326)||(33965521-33965569)
[»] chr8 (12 HSPs)
chr8 (131-331)||(16584420-16584618)
chr8 (291-336)||(1105031-1105076)
chr8 (256-332)||(12713415-12713491)
chr8 (256-332)||(28884704-28884780)
chr8 (256-332)||(28910676-28910752)
chr8 (256-332)||(34918157-34918233)
chr8 (283-326)||(12986673-12986716)
chr8 (283-326)||(20187474-20187517)
chr8 (283-326)||(20206543-20206586)
chr8 (7-73)||(35979552-35979615)
chr8 (262-334)||(32911169-32911241)
chr8 (256-332)||(43663628-43663704)
[»] chr7 (13 HSPs)
chr7 (1-73)||(25066234-25066306)
chr7 (1-73)||(19980492-19980565)
chr7 (255-334)||(41469425-41469504)
chr7 (216-326)||(37544927-37545041)
chr7 (256-332)||(21278291-21278367)
chr7 (7-73)||(37544792-37544855)
chr7 (283-326)||(44291055-44291098)
chr7 (256-332)||(7791599-7791675)
chr7 (282-326)||(12848443-12848487)
chr7 (256-332)||(25877525-25877601)
chr7 (256-332)||(35924850-35924926)
chr7 (256-296)||(38875421-38875461)
chr7 (278-326)||(47020550-47020598)
[»] chr6 (6 HSPs)
chr6 (2-73)||(24418945-24419016)
chr6 (265-324)||(13889132-13889191)
chr6 (282-326)||(28914210-28914254)
chr6 (255-336)||(12602253-12602334)
chr6 (256-332)||(6626053-6626129)
chr6 (283-331)||(8978221-8978269)
[»] chr4 (6 HSPs)
chr4 (256-336)||(15506563-15506643)
chr4 (256-332)||(37233464-37233540)
chr4 (257-336)||(8713981-8714060)
chr4 (283-326)||(33961843-33961886)
chr4 (278-326)||(17445697-17445745)
chr4 (282-326)||(39677746-39677790)
[»] chr3 (15 HSPs)
chr3 (291-336)||(9126383-9126428)
chr3 (291-336)||(9134490-9134535)
chr3 (256-332)||(20656545-20656621)
chr3 (283-326)||(2445963-2446006)
chr3 (283-334)||(10054951-10055002)
chr3 (283-336)||(35513144-35513197)
chr3 (255-324)||(47097531-47097600)
chr3 (256-332)||(85353-85429)
chr3 (256-332)||(672784-672860)
chr3 (278-326)||(20607770-20607818)
chr3 (256-332)||(25711648-25711724)
chr3 (256-332)||(26091066-26091142)
chr3 (278-326)||(30357253-30357301)
chr3 (278-326)||(46528092-46528140)
chr3 (278-326)||(53018983-53019031)
[»] chr5 (5 HSPs)
chr5 (278-326)||(8836607-8836655)
chr5 (283-326)||(10691992-10692035)
chr5 (283-326)||(42675740-42675783)
chr5 (278-326)||(29296189-29296237)
chr5 (256-332)||(43517581-43517657)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 176 - 441
Target Start/End: Complemental strand, 44843687 - 44843422
Alignment:
Q  176 tttttcattgagattgagtcaatatccatgatagtatgtaggtgaaaaaaggtgaaattttatagtaaccatgaataagagttttgagaaaatttatcta 275  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44843687 tttttcatcgagattgattcaatatccatgatagtatgtaggtgaaaaaaggtgaaattttatagtaacaatgaataagagttttgagaaaatttatcta 44843588  T
Q  276 aaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaatataattctcacatgagtatcgactattgagagttatgtgtct 375  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |    
T  44843587 aaaggataattatgacattattgtaaaattttaagtaagtttaggtgtaaccagagatataattctcacatgagtattgactattgagagttatgtgtgt 44843488  T
Q  376 cgttggcaatttagttgggaataacaatatgcagctctatctttaagaattcggtatattcttcga 441  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  44843487 cgttggcaatttagttgggagtaacaatatgcagctctatctttaagaattcggtatagtcttcga 44843422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 44845984 - 44845912
Alignment:
Q  1 gttaacgcgtgttgcaccatcaaatacccgtagcttgtagagtgcataacatatcagcacgttgaacaacaag 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  44845984 gttaacgcgtgttgcaccatcaaatacccgtagcttgtagagtgcataacatatcagcaatgtgaacaacaag 44845912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 44845869 - 44845824
Alignment:
Q  119 tcatttatctacatgcaatggactatggatgaaagacgttgtcatt 164  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  44845869 tcatttatctatatgcaatggactatggatgaaagacgttgtcatt 44845824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 45926248 - 45926308
Alignment:
Q  274 taaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaata 334  Q
    ||||||| ||||| || |||||||||||| |||||||||| |||||||||||| |||||||    
T  45926248 taaaagggtaattttggtattattgtaaacttttaagtaaatttaggtgtaacgagaaata 45926308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 12320277 - 12320330
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    |||| |||||||||||||||||||||||||| |||| ||||||| |||| ||||    
T  12320277 aattttgatattattgtaaaattttaagtaaatttaagtgtaactagaattata 12320330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 18604895 - 18604850
Alignment:
Q  291 tattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  18604895 tattattgtaaaattttaaataaatttaggtgtaaccagaattata 18604850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 30159058 - 30159015
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  30159058 aattttgatattattgtaaaattttaaataaatttaggtgtaac 30159015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 4490217 - 4490265
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| |||||||||||||||||||||| ||| ||| ||||||||    
T  4490217 aggacaattttgatattattgtaaaattttaaataaatttgggtgtaac 4490265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 15941563 - 15941639
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| || ||||||   ||||||||||| || ||| ||||||||||||||    
T  15941563 gttttaagaaaatttatataaaagggcaattttggtattataaaaaaattttaagaaaatttgggtgtaaccagaaa 15941639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 46674794 - 46674746
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| || ||||||||||||||||||| ||| ||||||||||||    
T  46674794 aggacaattttggtattattgtaaaattttaaataaatttaggtgtaac 46674746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 132 - 336
Target Start/End: Complemental strand, 43653126 - 43652923
Alignment:
Q  132 tgcaatggactatggatgaaagacgttgtcattcattctttaattttttcattgagattgagtcaatatccatgatagtatgtaggtgaaaaaaggtgaa 231  Q
    |||||| |||||||||||||||||||| | ||||| |||||||| ||| |||||||||||| | ||||||||||||  | | ||| ||||| | ||| ||    
T  43653126 tgcaatagactatggatgaaagacgttttaattcactctttaatcttt-cattgagattgattgaatatccatgattatttatagatgaaagagggtaaa 43653028  T
Q  232 attttatagtaaccatgaataagagttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaa 331  Q
    | |||| |||||| || ||| ||  |||||||||||||||| |||||  |||||| |  ||||||||||||||||||| ||| ||| ||| |||||||||    
T  43653027 aatttaaagtaacaatcaatcaggattttgagaaaatttatataaaaatataattttagtattattgtaaaattttaaataaatttgggtataaccagaa 43652928  T
Q  332 atata 336  Q
    |||||    
T  43652927 atata 43652923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 43653254 - 43653182
Alignment:
Q  1 gttaacgcgtgttgcaccatcaaatacccgtagcttgtagagtgcataacatatcagcacgttgaacaacaag 73  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||    
T  43653254 gttaacgcgtggtgcaccatcaaatactcgtcgcttgtagagtgcataacatatcagcatgttcaacaacaag 43653182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 17435426 - 17435357
Alignment:
Q  257 ttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||||||||||||||  ||| | | ||||| |||||||||||||||||||||| ||| |||| |||||||    
T  17435426 ttttgagaaaatttaaataagaaggtaattttgatattattgtaaaattttaaataaatttaagtgtaac 17435357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 35006456 - 35006509
Alignment:
Q  274 taaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaacc 327  Q
    |||||||  |||| ||||||||||||||| |||||||||| |||||||||||||    
T  35006456 taaaagggcaattttgatattattgtaaacttttaagtaaatttaggtgtaacc 35006509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 41568782 - 41568830
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  41568782 aggataattttggtattattgtaaaattttaaataaatttaggtgtaac 41568830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 25336578 - 25336527
Alignment:
Q  275 aaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    ||||||| |||| |||||||||||||||||||||| ||| ||| ||||||||    
T  25336578 aaaaggacaattttgatattattgtaaaattttaaataaatttgggtgtaac 25336527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 1520938 - 1521014
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| || ||||||   |||| |||||| || ||| ||||||||||||||    
T  1520938 gttttaagaaaatttatataaaaggacaattttggtattataaaaaaaatttaagaaaatttgggtgtaaccagaaa 1521014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 10639456 - 10639532
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| || ||||||   ||| ||||||| || ||||| ||||||||||||    
T  10639456 gttttaagaaaatttatataaaaggacaattttggtattataaaaaacttttaagaaaatttagatgtaaccagaaa 10639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 12242793 - 12242745
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| || ||||||||||||||||||| ||| ||||||||||||    
T  12242793 aggacaattttggtattattgtaaaattttaaataaatttaggtgtaac 12242745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 14287527 - 14287575
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| || ||||||||||||||||||| ||| ||||||||||||    
T  14287527 aggacaattttggtattattgtaaaattttaaataaatttaggtgtaac 14287575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 33965521 - 33965569
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| |||||||||||||||||||||| ||| ||| ||||||||    
T  33965521 aggacaattttgatattattgtaaaattttaaataaatttgggtgtaac 33965569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 16584618 - 16584420
Alignment:
Q  131 atgcaatggactatggatgaaagacgttgtcattcattctttaattttttcattgagattgagtcaatatccatgatagtatgtaggtgaaaaaaggtga 230  Q
    ||||||| || ||||||||| ||||||| | || ||||||||||| |||| ||||| ||||| | ||||||||| || || |||| |||||| | |||||    
T  16584618 atgcaatagattatggatgatagacgttttgatccattctttaatatttt-attgaaattgattgaatatccataat-gtttgtatgtgaaagatggtga 16584521  T
Q  231 aattttatagtaaccatgaataagagttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccaga 330  Q
    || |||| | | || |||||| || ||||||||||||||||  ||||||   |||| || ||||||| ||||||||||||||| ||| ||||||||||||    
T  16584520 aagtttagacttacaatgaatcagggttttgagaaaatttacataaaagagaaattttggtattattataaaattttaagtaaatttgggtgtaaccaga 16584421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 1105031 - 1105076
Alignment:
Q  291 tattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  1105031 tattattgtaaaattttaaataaatttaggtgtaaccagaattata 1105076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 12713491 - 12713415
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| |||||||||   ||| ||||||| || ||| ||||||||||||||    
T  12713491 gttttaagaaaatttatataaaaggacaattttgatattataaaaaacttttaagaaaatttgggtgtaaccagaaa 12713415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 28884780 - 28884704
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| |||||||||   ||| ||||||| || ||||||||||||||||||    
T  28884780 gttttaagaaaatttatataaaagggcaattttgatattataaaaaacttttaagaaaatttaggtgtaaccagaaa 28884704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 28910676 - 28910752
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| |||||||||   ||| ||||||| || ||||||||||||||||||    
T  28910676 gttttaagaaaatttatataaaagggcaattttgatattataaaaaacttttaagaaaatttaggtgtaaccagaaa 28910752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 34918157 - 34918233
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| || ||||||   ||||||||||| || ||| ||||||||||||||    
T  34918157 gttttaagaaaatttatataaaaggacaattttggtattataaaaaaattttaagaaaatttgggtgtaaccagaaa 34918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 12986716 - 12986673
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  12986716 aattttgatattattgtaaaattttaaataaatttaggtgtaac 12986673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 20187517 - 20187474
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  20187517 aattttgatattattgtaaaattttaaataaatttaggtgtaac 20187474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 20206586 - 20206543
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  20206586 aattttgatattattgtaaaattttaaataaatttaggtgtaac 20206543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 35979615 - 35979552
Alignment:
Q  7 gcgtgttgcaccatcaaatacccgtagcttgtagagtgcataacatatcagcacgttgaacaacaag 73  Q
    |||||||||||||||||||| || | | ||||||||| ||||||||||||  |||||||||||||||    
T  35979615 gcgtgttgcaccatcaaatagcc-ttgattgtagagttcataacatatca--acgttgaacaacaag 35979552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 32911169 - 32911241
Alignment:
Q  262 agaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaata 334  Q
    ||||||||||| ||||||   ||||||| | |||||||||||| |||||||| |||  ||||||||| |||||    
T  32911169 agaaaatttatataaaagagcaattatggtgttattgtaaaatcttaagtaaatttgtgtgtaaccataaata 32911241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 43663704 - 43663628
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| ||||||   |||| |||||||||   ||||||||||| || ||| ||||||||||||||    
T  43663704 gttttaagaaaatttatataaaagagcaattttgatattataaaaaaattttaagaaaatttgggtgtaaccagaaa 43663628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25066306 - 25066234
Alignment:
Q  1 gttaacgcgtgttgcaccatcaaatacccgtagcttgtagagtgcataacatatcagcacgttgaacaacaag 73  Q
    |||||| |||| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  25066306 gttaacacgtggtgcaccatcaaatactcgtcgcttgtagagtgcataatatatcagcacgttgaacaacaag 25066234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19980565 - 19980492
Alignment:
Q  1 gttaacgcgtgttgcaccat-caaatacccgtagcttgtagagtgcataacatatcagcacgttgaacaacaag 73  Q
    ||||||| ||| |||||||| ||||||| | |||||| |||||||||||||||||||||||||| |||||||||    
T  19980565 gttaacgtgtggtgcaccatacaaatactcatagcttttagagtgcataacatatcagcacgtttaacaacaag 19980492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 41469504 - 41469425
Alignment:
Q  255 agttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaata 334  Q
    |||||| ||||||||||| |||||||| |||| ||||||||| ||| | |||||||| | |||||||||||||| |||||    
T  41469504 agttttaagaaaatttatataaaaggacaattttgatattatcgtatacttttaagttaatttaggtgtaaccaaaaata 41469425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 37544927 - 37545041
Alignment:
Q  216 ggtgaaaaaaggtgaaattttatagtaaccatgaataaga----gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagt 311  Q
    ||||||| | |||||||||||| |||||| |||||| | |    ||||  ||||||||||| |||||||| |||| |||||||||||| |||||||||||    
T  37544927 ggtgaaagagggtgaaattttagagtaacaatgaatgaaatcaagtttgaagaaaatttatataaaaggacaattttgatattattgttaaattttaagt 37545026  T
Q  312 aagtttaggtgtaac 326  Q
    ||  || ||||||||    
T  37545027 aaaattgggtgtaac 37545041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 21278367 - 21278291
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| || ||||||   ||||||||||| || ||||||||||||||||||    
T  21278367 gttttaagaaaatttatataaaagggcaattttggtattataaaaaaattttaagaaaatttaggtgtaaccagaaa 21278291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 37544792 - 37544855
Alignment:
Q  7 gcgtgttgcaccatcaaatacccgtagcttgtagagtgcataacatatcagcacgttgaacaacaag 73  Q
    ||||| |||||||||||||| |||| | ||||||||| ||||||||||||  |||||||||||||||    
T  37544792 gcgtgctgcaccatcaaataaccgtcg-ttgtagagttcataacatatca--acgttgaacaacaag 37544855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 44291098 - 44291055
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  44291098 aattttgatattattgtaaaattttaaataaatttaggtgtaac 44291055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 7791599 - 7791675
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| |||||||||   ||| ||||||| || ||| ||||||||||||||    
T  7791599 gttttaagaaaatttatataaaagggcaattttgatattataaaaaacttttaagaaaatttgggtgtaaccagaaa 7791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 12848487 - 12848443
Alignment:
Q  282 taattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    ||||| || ||||||||||||||||||| ||| ||||||||||||    
T  12848487 taattttggtattattgtaaaattttaaataaatttaggtgtaac 12848443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 25877525 - 25877601
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| || ||||||   ||| ||||||| || ||| ||||||||||||||    
T  25877525 gttttaagaaaatttatataaaaggacaattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaa 25877601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 35924850 - 35924926
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| |||||||||   |||| |||||| || ||| ||||||||||||||    
T  35924850 gttttaagaaaatttatataaaagggcaattttgatattataaaaaaaatttaagaaaatttgggtgtaaccagaaa 35924926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 38875461 - 38875421
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattat 296  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  38875461 gttttaagaaaatttatataaaaggataattttgatattat 38875421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 47020550 - 47020598
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| |||||||||||||||||||||| ||| ||| ||||||||    
T  47020550 aggacaattttgatattattgtaaaattttaaataaatttgggtgtaac 47020598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 24419016 - 24418945
Alignment:
Q  2 ttaacgcgtgttgcaccatcaaatacccgtagcttgtagagtgcataacatatcagcacgttgaacaacaag 73  Q
    ||||| ||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||    
T  24419016 ttaacacgtgttgcaccatcaaataaccatcgcttgtagagcgcataacatatcagcacgttgaacaacaag 24418945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 13889132 - 13889191
Alignment:
Q  265 aaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgta 324  Q
    |||||||| ||||| || |||| || ||||||||||||||||||||||| ||||||||||    
T  13889132 aaatttatataaaaagacaattttggtattattgtaaaattttaagtaaatttaggtgta 13889191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 28914210 - 28914254
Alignment:
Q  282 taattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||    
T  28914210 taattttgatattattgtaaaattttaaataaatttaggtgtaac 28914254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 12602334 - 12602253
Alignment:
Q  255 agttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    |||||| ||||||||||| | || || ||||| || ||||||| ||||||||||||||  |||  ||||||||| |||||||    
T  12602334 agttttaagaaaatttatatgaatgggtaattttggtattattataaaattttaagtagatttgagtgtaaccataaatata 12602253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 6626053 - 6626129
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| |||||||||   |||| |||||| || ||| ||||||||||||||    
T  6626053 gttttaagaaaatttatataaaagggcaattttgatattataaaaaaaatttaagaaaatttgggtgtaaccagaaa 6626129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 8978221 - 8978269
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaa 331  Q
    ||||| ||||||||||||||||||||||||| ||||  |||||| ||||    
T  8978221 aattacgatattattgtaaaattttaagtaaatttaaatgtaactagaa 8978269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 15506563 - 15506643
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    ||||| ||||||||||| |||||||  |||| |  ||||||| ||||||||||||||| ||| |||||||||| |||||||    
T  15506563 gttttaagaaaatttatataaaagggcaatttttgtattattataaaattttaagtaaatttgggtgtaaccataaatata 15506643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 37233540 - 37233464
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| || ||||||   ||||||||||| || ||||||||||||||||||    
T  37233540 gttttaagaaaatttatataaaaggacaattttggtattataaaaaaattttaagaaaatttaggtgtaaccagaaa 37233464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 8713981 - 8714060
Alignment:
Q  257 ttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    |||| ||||||||||| |||||||| |||| || ||||||   ||| ||||||| || ||| ||||||||||||||||||    
T  8713981 ttttaagaaaatttatataaaaggacaattttggtattataaaaaacttttaaggaaatttgggtgtaaccagaaatata 8714060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 33961843 - 33961886
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  33961843 aattttgatattattgtaaaattttaaataaatttaggtgtaac 33961886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 17445697 - 17445745
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    ||||||||| || ||||||||||||||||||| ||| ||| ||||||||    
T  17445697 aggataattttggtattattgtaaaattttaaataaatttgggtgtaac 17445745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 39677746 - 39677790
Alignment:
Q  282 taattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    ||||| || ||||||||||||||||||| ||| ||||||||||||    
T  39677746 taattttggtattattgtaaaattttaaataaatttaggtgtaac 39677790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 9126383 - 9126428
Alignment:
Q  291 tattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||    
T  9126383 tattattgtaaaattttaagtaaatttaggtgtaactagaattata 9126428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 9134490 - 9134535
Alignment:
Q  291 tattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||    
T  9134490 tattattgtaaaattttaagtaaatttaggtgtaactagaattata 9134535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 20656621 - 20656545
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| |||||||||   ||| ||||||| || ||| ||||||||||||||    
T  20656621 gttttaagaaaatttatataaaaggacaattttgatattataaaaaacttttaagaaaatttgggtgtaaccagaaa 20656545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 2446006 - 2445963
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  2446006 aattttgatattattgtaaaattttaaataaatttaggtgtaac 2445963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 10054951 - 10055002
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaata 334  Q
    |||| ||||||||||||||||||| |||||| ||||||| ||||||| ||||    
T  10054951 aattttgatattattgtaaaatttcaagtaaatttaggtctaaccagcaata 10055002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 35513144 - 35513197
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaatata 336  Q
    |||| |||||||||||||||||||||| ||| ||||| |||||| |||| ||||    
T  35513144 aattttgatattattgtaaaattttaaataaatttagatgtaactagaattata 35513197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 47097600 - 47097531
Alignment:
Q  255 agttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgta 324  Q
    |||||| ||||||||||| |||||||| |||| |||||||||  |||| ||||||| || ||||| ||||    
T  47097600 agttttaagaaaatttatataaaaggacaattttgatattataataaacttttaagaaaatttagatgta 47097531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 85353 - 85429
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| |||||||||   ||| ||||||| || ||| ||||||||||||||    
T  85353 gttttaagaaaatttatataaaagggcaattttgatattataaaaaacttttaagaaaatttgggtgtaaccagaaa 85429  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 672784 - 672860
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||  |||| || ||||||   ||| ||||||| || ||||||||||||||||||    
T  672784 gttttaagaaaatttatataaaagggcaattttggtattataaaaaacttttaagaaaatttaggtgtaaccagaaa 672860  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 20607770 - 20607818
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| |||||||||||||||||||||| ||| ||| ||||||||    
T  20607770 aggacaattttgatattattgtaaaattttaaataaatttgggtgtaac 20607818  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 25711648 - 25711724
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| ||||| | ||||| || ||||||   ||||||||||| || ||| ||||||||||||||    
T  25711648 gttttaagaaaatttatataaaaaggtaattttggtattataaaaaaattttaagaaaatttgggtgtaaccagaaa 25711724  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 26091066 - 26091142
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| || ||||||   ||| ||||||| || ||| ||||||||||||||    
T  26091066 gttttaagaaaatttatataaaaggacaattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaa 26091142  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 30357301 - 30357253
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| || ||||||||||||||||||| ||| ||||||||||||    
T  30357301 aggacaattttggtattattgtaaaattttaaataaatttaggtgtaac 30357253  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 46528140 - 46528092
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| || ||||||||||||||||||| ||| ||||||||||||    
T  46528140 aggacaattttggtattattgtaaaattttaaataaatttaggtgtaac 46528092  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 53019031 - 53018983
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| |||||||||||||||||||||| ||| ||| ||||||||    
T  53019031 aggacaattttgatattattgtaaaattttaaataaatttgggtgtaac 53018983  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 8836607 - 8836655
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| |||||||||||||||||||||| ||| ||||||||||||    
T  8836607 aggacaattttgatattattgtaaaattttaaataaatttaggtgtaac 8836655  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 10691992 - 10692035
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  10691992 aattttgatattattgtaaaattttaaataaatttaggtgtaac 10692035  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 42675740 - 42675783
Alignment:
Q  283 aattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||    
T  42675740 aattttgatattattgtaaaattttaaataaatttaggtgtaac 42675783  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 29296237 - 29296189
Alignment:
Q  278 aggataattatgatattattgtaaaattttaagtaagtttaggtgtaac 326  Q
    |||| |||| |||||||||||||||||||||| ||| ||||| ||||||    
T  29296237 aggacaattttgatattattgtaaaattttaaataaatttagatgtaac 29296189  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 43517657 - 43517581
Alignment:
Q  256 gttttgagaaaatttatctaaaaggataattatgatattattgtaaaattttaagtaagtttaggtgtaaccagaaa 332  Q
    ||||| ||||||||||| |||||||| |||| || ||||||   ||| ||||||| || ||| ||||||||||||||    
T  43517657 gttttaagaaaatttatataaaaggacaattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaa 43517581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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