View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_17 (Length: 395)
Name: NF19361_low_17
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 43614387 - 43614073
Alignment:
| Q |
18 |
tagcactagtgtgaacaaaataaatggaaatatattattatagtattgacctgtaaccgaatccacaaaatctccatcgatgaataacttggtgaacttg |
117 |
Q |
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| T |
43614387 |
tagcactagtgtgaacaaaataaatggaaatatattattatagtattgacctgtaaccgaatccacaaaatctccatcgatgaataacttggtgaacttg |
43614288 |
T |
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| Q |
118 |
atggtgggttcgccattaactgggccagtcatcttt-gtgtttgtgggattgacttaagtgattgatgaaatgaaagaagagagtgcagtttgagaattg |
216 |
Q |
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| T |
43614287 |
atggtgggttcgccattaactgggccagtcatcttttgtgtttgtggggttcacttgagtgattgatgaaatgaaataagagagtgcagtttgagaattg |
43614188 |
T |
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| Q |
217 |
agatgttatagaaattgaatccattattattatatgtttaattacgacattattgagaaaaatatggtttattccacataaacaatattatcattgtaat |
316 |
Q |
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| T |
43614187 |
agatgttatagaaattgaatccattattattatatgtttaattacgacattattgagaaaaatatggtttattccacataaacaatattatcattgtaat |
43614088 |
T |
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| Q |
317 |
tgcactccttgtgta |
331 |
Q |
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| T |
43614087 |
tgcactccttgtgta |
43614073 |
T |
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