View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19361_low_2 (Length: 804)

Name: NF19361_low_2
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19361_low_2
NF19361_low_2
[»] chr4 (1 HSPs)
chr4 (18-784)||(37595732-37596498)


Alignment Details
Target: chr4 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 18 - 784
Target Start/End: Complemental strand, 37596498 - 37595732
Alignment:
Q  18 tatcacatgtcttttttattcacagcataatgaagcataggtcaatttcaaagcatttaccactgaaaaggacaagatttttgacacttttacttcacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37596498 tatcacatgtcttttttattcacagcataatgaagcataggtcaatttcaaagcatttaccactgaaaaggacaagatttttgacacttttacttcacag 37596399  T
Q  118 tatatgcatcaataataatagacaaaatgacaaaagcatttttacaaaattcagtaccctattgttagcaaatttcagcattgatctcttctcttctata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37596398 tatatgcatcaataataatagacaaaatgacaaaagcatttttacaaaattcagtaccctattgttagcaaatttcagcattgatctcttctcttctata 37596299  T
Q  218 ttgtcactttctctcattctctcacaataacccttttttgttctttgcactttttattcaccatttgacacttttccccttagaaaatattcatttgtga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37596298 ttgtcactttctctcattctctcacaataacccttttttgttctttgcactttttattcaccatttgacacttttccccttagaaaatattcatttgtga 37596199  T
Q  318 attagtaaactatgatgagtttgaaaacaagtaacaagaaaatgataagaggtttcatgtgccactctcaatcatcaacagcagtgtgtatgagtatacg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37596198 attagtaaactatgatgagtttgaaaacaagtaacaagaaaatgataagaggtttcatgtgccactctcaatcatcaacagcagtgtgtatgagtatacg 37596099  T
Q  418 tgattctaatcattctgttgttgtacctaagaggattgaaaagagtgtttttcttgatgatacaaggctcatcaatttttccaaatactccaaacttgtt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37596098 tgattctaatcattctgttgttgtacctaagaggattgaaaagagtgtttttcttgatgatacaaggctcatcaatttttccaaatactccaaacttgtt 37595999  T
Q  518 gagtctcctatgtccaatcctgtccaaaagatcattgttagagagaagaatcaaagttatcaagctattgaaccaagggaacttcagaaaacatctacac 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37595998 gagtctcctatgtccaatcctgtccaaaagatcattgttagagagaagaatcaaagttatcaagctattgaaccaagggaacttcagaaaacatctacac 37595899  T
Q  618 ataatgtttttcaggtttgttaaattcacattttctactacactaggtcaaatatagagcaaatttcannnnnnncatctacattatatatgtagcatgg 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  37595898 ataatgtttttcaggtttgttaaattcacattttctactacactaggtcaaatatagagcaaatttcatttttttcatctacattatatatgtagcatgg 37595799  T
Q  718 ctttaaattgtggttcaatttcgctccaaaccttttgatgttggagagacttcaaaaccttttaggt 784  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37595798 ctttaaattgtggttcaatttcgctccaaaccttttgatgttgtagagacttcaaaaccttttaggt 37595732  T

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