View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_20 (Length: 376)
Name: NF19361_low_20
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 45668221 - 45668561
Alignment:
| Q |
15 |
acttcgattttgtaggattgagttataggctatttggaaccccatgcaactcacatttggtaaatgcaacagtatttagcttcttaaaattcaggttgca |
114 |
Q |
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| T |
45668221 |
acttcgattttgtaggattgagttataggctatttggaaccccatgcaactcacatttggtaaatgcaacagtatttagcttcttaaaattcacgttgaa |
45668320 |
T |
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| Q |
115 |
ttacacattacactcttgccttttctcttgaagaactatttacaagccaagtaatggaacaaactttcattgcaacaagttaacgttagaaatttacaag |
214 |
Q |
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| T |
45668321 |
ttacacattacactcttgtcttttctcttgaagaactatttacaagccatgtaatggaacaaactttcattccaac-----aacgttagaaatttacaag |
45668415 |
T |
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| Q |
215 |
aaacacttaaaacaatttctaagattaagaacatagaagcattatgaaacttttggctgctgcagtactgctgaagggcatcataactatgacagaataa |
314 |
Q |
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| T |
45668416 |
aagcacttaaaacaatttctaagattaagaacatagaagcattatgaaacttttggctgctgcagtactgctgaagggcatcataactattacagaataa |
45668515 |
T |
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| Q |
315 |
tagaactaatagtgcttttggtttctccaatataggacgaatatgc |
360 |
Q |
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| T |
45668516 |
tagaactaatagtgcttttggtttctccaatataggacgaatatgc |
45668561 |
T |
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