View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19361_low_21 (Length: 372)

Name: NF19361_low_21
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19361_low_21
NF19361_low_21
[»] chr7 (40 HSPs)
chr7 (1-359)||(28059120-28059500)
chr7 (101-172)||(35983220-35983291)
chr7 (101-172)||(36004632-36004703)
chr7 (103-172)||(24611529-24611598)
chr7 (194-258)||(41037127-41037191)
chr7 (194-260)||(5995142-5995208)
chr7 (194-260)||(35983107-35983173)
chr7 (194-260)||(36004519-36004585)
chr7 (102-172)||(41037238-41037308)
chr7 (103-172)||(41378344-41378413)
chr7 (200-260)||(3203386-3203446)
chr7 (108-172)||(41585857-41585921)
chr7 (194-260)||(31953159-31953225)
chr7 (194-260)||(41378460-41378526)
chr7 (102-172)||(48227203-48227273)
chr7 (108-172)||(26927943-26928007)
chr7 (121-172)||(3203278-3203329)
chr7 (101-172)||(9522437-9522508)
chr7 (101-172)||(14656567-14656638)
chr7 (214-260)||(14313952-14313998)
chr7 (209-259)||(21993471-21993521)
chr7 (194-260)||(48227320-48227386)
chr7 (194-259)||(3961178-3961243)
chr7 (120-172)||(7596869-7596922)
chr7 (209-262)||(35221774-35221827)
chr7 (102-171)||(36343104-36343173)
chr7 (108-172)||(21993583-21993647)
chr7 (101-161)||(27131121-27131181)
chr7 (101-172)||(32392208-32392280)
chr7 (216-260)||(32392287-32392331)
chr7 (209-265)||(43077597-43077653)
chr7 (101-172)||(28333734-28333805)
chr7 (101-172)||(35221636-35221707)
chr7 (194-260)||(46003821-46003888)
chr7 (103-177)||(5995025-5995099)
chr7 (209-262)||(12362936-12362989)
chr7 (209-262)||(27946927-27946980)
chr7 (108-172)||(3349992-3350056)
chr7 (109-149)||(3961313-3961353)
chr7 (101-172)||(45100084-45100156)
[»] chr8 (43 HSPs)
chr8 (194-264)||(44873909-44873979)
chr8 (194-260)||(9479415-9479481)
chr8 (194-260)||(10078305-10078371)
chr8 (194-260)||(30774126-30774192)
chr8 (194-260)||(33568158-33568224)
chr8 (101-172)||(16930776-16930847)
chr8 (101-172)||(30774239-30774310)
chr8 (194-261)||(44473747-44473814)
chr8 (194-260)||(23472515-23472580)
chr8 (194-260)||(39077373-39077439)
chr8 (101-173)||(3210839-3210911)
chr8 (101-172)||(10078415-10078486)
chr8 (201-260)||(16930901-16930960)
chr8 (101-172)||(19922624-19922695)
chr8 (101-172)||(28539277-28539348)
chr8 (209-260)||(38498355-38498406)
chr8 (102-172)||(253923-253993)
chr8 (102-172)||(661865-661935)
chr8 (102-172)||(847663-847733)
chr8 (194-260)||(26912412-26912478)
chr8 (196-264)||(1271118-1271186)
chr8 (213-261)||(16784330-16784378)
chr8 (100-172)||(40067453-40067525)
chr8 (207-258)||(14371607-14371658)
chr8 (120-171)||(14916653-14916704)
chr8 (121-172)||(16645472-16645523)
chr8 (222-264)||(3210923-3210965)
chr8 (194-260)||(28539164-28539230)
chr8 (194-259)||(12295256-12295321)
chr8 (108-172)||(9478825-9478889)
chr8 (120-172)||(9479528-9479580)
chr8 (194-261)||(5224299-5224366)
chr8 (209-260)||(12176311-12176362)
chr8 (209-260)||(12420739-12420790)
chr8 (213-264)||(42806206-42806257)
chr8 (121-172)||(42806325-42806376)
chr8 (222-260)||(16645536-16645574)
chr8 (194-260)||(31272864-31272930)
chr8 (222-260)||(39589994-39590032)
chr8 (101-162)||(33568040-33568101)
chr8 (108-148)||(12295138-12295178)
chr8 (124-172)||(28969095-28969143)
chr8 (108-168)||(44874031-44874091)
[»] chr4 (45 HSPs)
chr4 (194-260)||(13386984-13387050)
chr4 (194-260)||(48860816-48860882)
chr4 (194-260)||(34728313-34728379)
chr4 (194-259)||(38963335-38963400)
chr4 (194-250)||(32626155-32626211)
chr4 (108-172)||(51702570-51702634)
chr4 (101-172)||(32626037-32626108)
chr4 (101-172)||(34728195-34728266)
chr4 (101-172)||(51682534-51682605)
chr4 (194-260)||(42434322-42434388)
chr4 (194-260)||(51702457-51702523)
chr4 (108-172)||(6137373-6137437)
chr4 (194-260)||(6137260-6137326)
chr4 (194-260)||(11020441-11020507)
chr4 (194-260)||(20835707-20835773)
chr4 (194-260)||(47960388-47960454)
chr4 (102-171)||(13372486-13372555)
chr4 (102-171)||(13382687-13382756)
chr4 (194-263)||(33117511-33117580)
chr4 (100-172)||(28589211-28589283)
chr4 (108-172)||(40479960-40480024)
chr4 (101-172)||(20503546-20503617)
chr4 (121-172)||(27907103-27907154)
chr4 (209-260)||(38427177-38427228)
chr4 (121-172)||(38962518-38962569)
chr4 (194-260)||(20503433-20503499)
chr4 (194-260)||(32090056-32090122)
chr4 (194-260)||(43837783-43837849)
chr4 (194-260)||(51682652-51682718)
chr4 (214-260)||(54158117-54158163)
chr4 (1-38)||(39703325-39703362)
chr4 (100-172)||(43837664-43837737)
chr4 (195-235)||(6944654-6944694)
chr4 (120-172)||(11020342-11020394)
chr4 (108-172)||(20835820-20835884)
chr4 (194-262)||(34041285-34041353)
chr4 (124-172)||(40875325-40875373)
chr4 (200-259)||(5975657-5975716)
chr4 (209-260)||(22254223-22254274)
chr4 (101-172)||(33117627-33117698)
chr4 (121-172)||(34041187-34041238)
chr4 (194-244)||(32868001-32868051)
chr4 (194-235)||(13372397-13372438)
chr4 (194-235)||(13382598-13382639)
chr4 (124-172)||(19329473-19329521)
[»] chr1 (43 HSPs)
chr1 (194-264)||(1838751-1838821)
chr1 (101-172)||(1627647-1627718)
chr1 (194-261)||(1627764-1627831)
chr1 (102-172)||(1838633-1838703)
chr1 (194-260)||(25825388-25825454)
chr1 (194-259)||(14463321-14463386)
chr1 (209-265)||(44720061-44720117)
chr1 (194-264)||(9005425-9005495)
chr1 (108-172)||(24992844-24992908)
chr1 (194-262)||(26213789-26213857)
chr1 (101-172)||(1469667-1469738)
chr1 (194-261)||(25671067-25671134)
chr1 (121-172)||(25825290-25825341)
chr1 (194-260)||(2964952-2965018)
chr1 (102-172)||(8549535-8549605)
chr1 (194-260)||(49659892-49659958)
chr1 (194-251)||(17452986-17453043)
chr1 (196-260)||(38509712-38509776)
chr1 (120-172)||(44720178-44720230)
chr1 (121-172)||(14463433-14463484)
chr1 (101-172)||(26284479-26284550)
chr1 (194-260)||(1406710-1406776)
chr1 (194-259)||(5226801-5226866)
chr1 (194-259)||(40460983-40461048)
chr1 (108-168)||(15660855-15660915)
chr1 (124-172)||(26842862-26842910)
chr1 (108-172)||(26897367-26897430)
chr1 (194-242)||(43939542-43939590)
chr1 (121-172)||(1406823-1406874)
chr1 (101-172)||(10769741-10769812)
chr1 (194-253)||(41146550-41146609)
chr1 (121-172)||(42470614-42470665)
chr1 (121-172)||(43939444-43939495)
chr1 (121-172)||(49660401-49660452)
chr1 (222-260)||(1469751-1469789)
chr1 (102-172)||(4105617-4105687)
chr1 (194-260)||(7336148-7336214)
chr1 (194-260)||(30414192-30414258)
chr1 (194-259)||(17168157-17168222)
chr1 (194-259)||(30819603-30819668)
chr1 (124-172)||(9338838-9338886)
chr1 (108-172)||(30414081-30414145)
chr1 (128-172)||(40461095-40461139)
[»] scaffold0168 (1 HSPs)
scaffold0168 (196-260)||(35054-35118)
[»] scaffold0001 (2 HSPs)
scaffold0001 (101-172)||(392519-392590)
scaffold0001 (194-260)||(392406-392472)
[»] chr3 (49 HSPs)
chr3 (193-264)||(8674533-8674604)
chr3 (194-260)||(3283365-3283431)
chr3 (194-260)||(42092808-42092874)
chr3 (194-253)||(8351060-8351119)
chr3 (121-172)||(13700245-13700296)
chr3 (101-172)||(54253770-54253841)
chr3 (194-260)||(21395954-21396020)
chr3 (194-260)||(45408247-45408313)
chr3 (194-260)||(54160389-54160455)
chr3 (194-258)||(34673561-34673625)
chr3 (121-172)||(34673339-34673390)
chr3 (121-172)||(39328526-39328577)
chr3 (121-172)||(50090825-50090876)
chr3 (209-260)||(50090938-50090989)
chr3 (194-260)||(35711921-35711987)
chr3 (194-260)||(54411885-54411951)
chr3 (213-262)||(27027332-27027381)
chr3 (108-172)||(5232596-5232660)
chr3 (108-172)||(9665423-9665487)
chr3 (108-172)||(41355527-41355591)
chr3 (101-172)||(35280522-35280593)
chr3 (121-172)||(52945683-52945734)
chr3 (194-260)||(13700343-13700409)
chr3 (194-252)||(19855473-19855531)
chr3 (194-260)||(54253888-54253954)
chr3 (100-173)||(4126086-4126159)
chr3 (209-258)||(39328415-39328464)
chr3 (214-263)||(46770492-46770541)
chr3 (103-172)||(54411769-54411838)
chr3 (194-250)||(20513124-20513180)
chr3 (108-172)||(46969880-46969944)
chr3 (123-170)||(2911652-2911699)
chr3 (121-172)||(3283267-3283318)
chr3 (209-260)||(9665310-9665361)
chr3 (121-172)||(11238780-11238831)
chr3 (121-172)||(21395856-21395907)
chr3 (209-260)||(36418714-36418765)
chr3 (124-167)||(45408443-45408486)
chr3 (214-260)||(6125771-6125817)
chr3 (130-172)||(39866794-39866836)
chr3 (126-172)||(45408360-45408406)
chr3 (194-235)||(4125999-4126040)
chr3 (194-235)||(11238692-11238733)
chr3 (101-172)||(19855578-19855646)
chr3 (120-173)||(35180686-35180739)
chr3 (108-172)||(27037965-27038029)
chr3 (194-242)||(34673437-34673485)
chr3 (194-242)||(34673499-34673547)
chr3 (196-260)||(37702665-37702729)
[»] chr2 (29 HSPs)
chr2 (194-261)||(12725804-12725871)
chr2 (194-264)||(18924626-18924696)
chr2 (194-260)||(29471721-29471787)
chr2 (194-260)||(9548297-9548363)
chr2 (194-264)||(10664778-10664848)
chr2 (108-172)||(10862628-10862692)
chr2 (194-265)||(16719814-16719885)
chr2 (101-172)||(18924508-18924579)
chr2 (121-172)||(34450367-34450418)
chr2 (103-172)||(9548181-9548250)
chr2 (194-250)||(21950650-21950706)
chr2 (108-172)||(27097085-27097149)
chr2 (121-172)||(10664680-10664731)
chr2 (101-172)||(29471603-29471674)
chr2 (209-260)||(39089205-39089256)
chr2 (194-260)||(1750005-1750071)
chr2 (214-264)||(4206426-4206476)
chr2 (194-260)||(24314215-24314281)
chr2 (194-264)||(42090411-42090481)
chr2 (124-173)||(14747350-14747399)
chr2 (209-253)||(33740242-33740286)
chr2 (103-171)||(36779775-36779843)
chr2 (223-267)||(39435047-39435091)
chr2 (211-259)||(44539948-44539996)
chr2 (121-172)||(12725706-12725757)
chr2 (222-264)||(6231217-6231259)
chr2 (222-260)||(10862577-10862615)
chr2 (222-264)||(36779859-36779901)
chr2 (103-172)||(21950753-21950822)
[»] chr5 (29 HSPs)
chr5 (194-260)||(17689430-17689496)
chr5 (194-260)||(27365716-27365782)
chr5 (193-260)||(28038295-28038362)
chr5 (102-172)||(28813033-28813103)
chr5 (194-259)||(20269235-20269300)
chr5 (194-260)||(9741726-9741792)
chr5 (194-260)||(23204377-23204443)
chr5 (198-260)||(33429238-33429300)
chr5 (206-260)||(38758724-38758778)
chr5 (103-172)||(9741839-9741908)
chr5 (194-259)||(15978804-15978869)
chr5 (127-172)||(16490718-16490763)
chr5 (108-172)||(18015756-18015820)
chr5 (101-172)||(19995389-19995460)
chr5 (101-172)||(23204490-23204561)
chr5 (194-253)||(37172484-37172543)
chr5 (101-172)||(38758595-38758666)
chr5 (194-260)||(16994231-16994297)
chr5 (214-260)||(19323812-19323858)
chr5 (194-260)||(21913838-21913904)
chr5 (103-172)||(17689315-17689384)
chr5 (121-172)||(37172386-37172437)
chr5 (121-172)||(38293472-38293523)
chr5 (214-260)||(15388222-15388268)
chr5 (214-260)||(16273677-16273723)
chr5 (120-172)||(25593304-25593357)
chr5 (215-260)||(31056485-31056530)
chr5 (209-253)||(13960484-13960528)
chr5 (194-230)||(19325130-19325166)
[»] chr6 (16 HSPs)
chr6 (108-172)||(18102558-18102622)
chr6 (101-172)||(15081234-15081305)
chr6 (194-260)||(18096331-18096397)
chr6 (121-172)||(6322603-6322654)
chr6 (101-172)||(7190709-7190780)
chr6 (121-172)||(12159440-12159491)
chr6 (101-172)||(14975378-14975449)
chr6 (125-172)||(18096438-18096485)
chr6 (101-163)||(19102056-19102118)
chr6 (194-259)||(10074994-10075059)
chr6 (124-173)||(10075105-10075154)
chr6 (194-243)||(15081138-15081187)
chr6 (194-258)||(17347136-17347200)
chr6 (209-260)||(9533365-9533416)
chr6 (209-260)||(9891373-9891424)
chr6 (200-251)||(12159544-12159595)
[»] scaffold0093 (2 HSPs)
scaffold0093 (194-253)||(9159-9218)
scaffold0093 (121-172)||(9264-9315)
[»] scaffold0086 (1 HSPs)
scaffold0086 (101-172)||(8500-8571)
[»] scaffold0002 (2 HSPs)
scaffold0002 (121-172)||(94801-94852)
scaffold0002 (194-253)||(478317-478376)
[»] scaffold0246 (1 HSPs)
scaffold0246 (108-172)||(17899-17963)
[»] scaffold0004 (1 HSPs)
scaffold0004 (194-262)||(121723-121791)
[»] scaffold0006 (1 HSPs)
scaffold0006 (194-260)||(231219-231285)
[»] scaffold0003 (1 HSPs)
scaffold0003 (214-260)||(88218-88264)
[»] scaffold0057 (1 HSPs)
scaffold0057 (103-172)||(75036-75105)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 28059120 - 28059500
Alignment:
Q  1 acctaatgttgatgaagagaaatttgaagtcacgaattgcctaatatgaaagatatttagaccaaaatcatacatatgaaaatatagcataattaaacaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28059120 acctaatgttgatgaagagaaatttgaagttacgaattgctaaatatgaaagatatttagaccaaaatcatacatatgaaaatatagcataattaaacaa 28059219  T
Q  101 ggttttt-ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccactttttaagttaggaaaatgctaactagttttag 199  Q
    || |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  28059220 gggttttgctagaagtcacatatgaaggtgtcttttagcaactcacaccttaatgtgtgatttccactttttaagttagggaaatgttaactagttttag 28059319  T
Q  200 caaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcattatacaatattattaata--------tcataacag 291  Q
    ||||| ||||||||||||||||||||||||  |||| ||||||||||||||||| |||||||||||| |||||||||||||||        ||||||| |    
T  28059320 caaatgctcatagaataacttcctaaaaga-tccttcataaaaggtgtcttctagcaaaactcattacacaatattattaatatcataagttcataactg 28059418  T
Q  292 tgtaccttgaatag--------------ttgagaatagttgaagaatccattgagacttgagagaattaaagtttttgagaa 359  Q
    ||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28059419 tgtaccttgaatagttgagaatagttgattgagaatagttgaagaatccattgagacttgagagaattaaagtttttgagaa 28059500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 35983291 - 35983220
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  35983291 ggtttttctagaagccacctatgaaggtgtcttttagcaacccacaccttaaggtgtgattttcacttttta 35983220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 36004703 - 36004632
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  36004703 ggtttttctagaagccacctatgaaggtgtcttttagcaacccacaccttaaggtgtgattttcacttttta 36004632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 24611598 - 24611529
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  24611598 ttttgctagaagccacctatgaaggtgtcttttagcaacccacacctcaatgtgtgattttcacttttta 24611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 41037191 - 41037127
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaa 258  Q
    ||||| ||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  41037191 ttttaccaaatgctcatagaataatttactaaaagacaccttcataaaaggtgtcttctaacaaa 41037127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 5995142 - 5995208
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||    
T  5995142 ttttagcaaatgctcatataataacttgctaaaagacactttcataaaaggtgtcttctagcaaaac 5995208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 35983173 - 35983107
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||| ||| |||||| |||||||||| ||||||    
T  35983173 ttttagcaaatgctcatagaataacttgctaaaagacatcttcataaaatgtgtcttctagcaaaac 35983107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 36004585 - 36004519
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||| ||| |||||| |||||||||| ||||||    
T  36004585 ttttagcaaatgctcatagaataacttgctaaaagacatcttcataaaatgtgtcttctagcaaaac 36004519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 41037308 - 41037238
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| ||||||||||   |||||||||||||||||||||||||| || || |||||||||||||||||||    
T  41037308 gttttgctagaagtcatccatgaaggtgtcttttaacaacccacatctcaaggtgtgatttccacttttta 41037238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 41378344 - 41378413
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  41378344 ttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 41378413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 3203386 - 3203446
Alignment:
Q  200 caaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  3203386 caaatgctcatagaataacttgctaaaagacaccttcataaaaggtatcttctagcaaaac 3203446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 41585857 - 41585921
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  41585857 ctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 41585921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 31953225 - 31953159
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  31953225 ttttaacaaatgctcatagactaacttgctaaaagacaccttcataaaaggtgtgttctagcaaaac 31953159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 41378460 - 41378526
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||  |||||||||||||| |||||| ||||||| |||||| |||||||||| ||||||    
T  41378460 ttttagcaaatgttcatagaataacttgctaaaaaacaccttaataaaaagtgtcttctagcaaaac 41378526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 48227203 - 48227273
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| ||||||| |||  |||||||||||||||| |||||||||| | || |||||||||||||||||||    
T  48227203 gttttgctagaagccactcatgaaggtgtcttttagcaacccacacttcaaggtgtgatttccacttttta 48227273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 26927943 - 26928007
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| |||| ||||||| || |||||||||||||||||||    
T  26927943 ctagaagccacccatgaaggtgtcttttagcaactcacacctcaaggtgtgatttccacttttta 26928007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 3203278 - 3203329
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| || ||||||||| |||||||||    
T  3203278 atgaaggtgtcttttagcaacccacacctcaaggtgtgattttcacttttta 3203329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 9522437 - 9522508
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||| ||| ||| |||||||| || |||||||||||||||||||    
T  9522437 ggttttgctagaagccacccatgaaggtgtctcttagcaatccacacctcaaggtgtgatttccacttttta 9522508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 14656638 - 14656567
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  ||||||||||||||||  ||||||||||| |||||||||||| ||| |||||    
T  14656638 ggttttgctagaagccactcatgaaggtgtcttttagaaacccacacctcaatgtgtgattttcacctttta 14656567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 14313998 - 14313952
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  14313998 ataacttgctaaaagacaccttcataaaaggtatcttctaacaaaac 14313952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 21993521 - 21993471
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    |||||||||||| |||||||||||||| |||||| |||||||||| |||||    
T  21993521 atagaataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaa 21993471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 48227320 - 48227386
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||  |||||||||| ||| |||||| ||||||| ||||||||||||||| | ||||||    
T  48227320 ttttagcaaatgatcatagaatatcttgctaaaatacaccttcataaaaggtgtcttccagcaaaac 48227386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 3961243 - 3961178
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||| |||||  |||||||||||||| ||||||||||| || |||||| |||||||||| |||||    
T  3961243 ttttaacaaatgatcatagaataacttgctaaaagacactttcataaaatgtgtcttctagcaaaa 3961178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 7596869 - 7596922
Alignment:
Q  120 tatgaaggtgtcttttaacaacccacaccttaatgtgtgatt-tccacttttta 172  Q
    |||||||||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  7596869 tatgaaggtgtcttttaacaattcacacctcaatgtgtgattatccacttttta 7596922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 35221774 - 35221827
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactc 262  Q
    |||||||||||| |||||||||||||| |||||| || ||||||| ||||||||    
T  35221774 atagaataacttgctaaaagacaccttcataaaaagtatcttctagcaaaactc 35221827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 36343173 - 36343104
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttt 171  Q
    ||||| ||||||||||   |||||||||| ||||| |||||||||||| ||  |||||||||||||||||    
T  36343173 gttttgctagaagtcatccatgaaggtgttttttagcaacccacacctcaagatgtgatttccacttttt 36343104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 21993647 - 21993583
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||| ||||||||| |||||||||||| || ||||||||| |||||||||    
T  21993647 ctagaagccacccatgaagttgtcttttagcaacccacacctcaaggtgtgattttcacttttta 21993583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 27131181 - 27131121
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatt 161  Q
    |||||| ||||||| |||| |||||||||||||||| ||| |||||||| || ||||||||    
T  27131181 ggttttgctagaagacacacatgaaggtgtcttttagcaatccacacctcaaggtgtgatt 27131121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 32392208 - 32392280
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatt-tccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || ||| |||| |||||||||||    
T  32392208 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgagattatccacttttta 32392280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 32392287 - 32392331
Alignment:
Q  216 aacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||    
T  32392287 aacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 32392331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 43077597 - 43077653
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcatt 265  Q
    |||||| ||||| |||||| ||||||| ||||||||||||||||| |||||| ||||    
T  43077597 atagaaaaacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaacccatt 43077653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 28333734 - 28333805
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| ||||| |||| | || ||||||||| |||||||||    
T  28333734 ggttttgctagaagccactcatgaaggtgtcttttagcaaccaacacgtcaaggtgtgattttcacttttta 28333805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 35221636 - 35221707
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||  ||||| ||||||||    
T  35221636 ggttttgctagaagccaccaatgaaggtgtcttttagcaacccacacctcaaggtgaaatttctacttttta 35221707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 46003821 - 46003888
Alignment:
Q  194 ttttagcaaatact-catagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| || |||||| |||||| |||||||||||||| || ||| |||||||||| ||||||    
T  46003821 ttttagcaaatgcttcatagagtaacttgctaaaagacaccttcatgaaatgtgtcttctagcaaaac 46003888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 5995025 - 5995099
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccactttttaagtta 177  Q
    |||| ||||||||||   |||||||||||||||| ||| | |||||| || ||||||||| |||||||| |||||    
T  5995025 ttttgctagaagtcatccatgaaggtgtcttttagcaatctacacctcaaggtgtgatttacacttttttagtta 5995099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 12362936 - 12362989
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactc 262  Q
    ||||||||||||  |||||||||| || ||||| |||||||||||||| |||||    
T  12362936 atagaataacttgttaaaagacacattcataaagggtgtcttctaacagaactc 12362989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 27946927 - 27946980
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactc 262  Q
    |||||||||||| |||||||||||||  |||||  |||||||||| ||||||||    
T  27946927 atagaataacttgctaaaagacacctccataaagagtgtcttctagcaaaactc 27946980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 3349992 - 3350056
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| ||| ||| || |||| ||||| ||||||||| || || |||||||||||||||||||    
T  3349992 ctagaagccacctataaaagtgttttttagcaacccacatctcaaggtgtgatttccacttttta 3350056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 3961353 - 3961313
Alignment:
Q  109 tagaagtcacatatgaaggtgtcttttaacaacccacacct 149  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  3961353 tagaagtcacccatgaaggtgtcttttagcaacccacacct 3961313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 45100156 - 45100084
Alignment:
Q  101 ggtttttctagaagtcac-atatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| ||| | |||||||||||||||| |||||||| ||| ||  |||||||| |||||||||    
T  45100156 ggttttgctagaagccaccaaatgaaggtgtcttttagcaacccacgcctcaagatgtgatttacacttttta 45100084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 44873979 - 44873909
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  44873979 ttttagcaaatgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctaacaaaactcat 44873909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 9479481 - 9479415
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||    
T  9479481 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaatgtgtcttctaacaaaac 9479415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 10078371 - 10078305
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  10078371 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 10078305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 30774192 - 30774126
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  30774192 ttttagcaaatgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaac 30774126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 33568158 - 33568224
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| |||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  33568158 ttttaacaaatgctcatagaataacttgataaaagacacctttataaaatgtgtcttctaacaaaac 33568224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 16930776 - 16930847
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| |||||||||||  |||||||||||||||| ||| |||||||| || |||||||||||||||||||    
T  16930776 ggttttgctagaagtcacccatgaaggtgtcttttagcaatccacacctcaaggtgtgatttccacttttta 16930847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 30774310 - 30774239
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  | |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  30774310 ggttttgctagaagccactcacgaaggtgtcttttagcaacccacaccttaaggtgtgatttccacttttta 30774239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 44473814 - 44473747
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaact 261  Q
    ||||| |||||||||||| |||||||| |||||||||||||| || |||| |||||||||||||||||    
T  44473814 ttttaacaaatactcatacaataacttgctaaaagacaccttcatgaaagatgtcttctaacaaaact 44473747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 23472580 - 23472515
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||    
T  23472580 ttttagcaaatcctcatagaataactgc-taaaagacaccttcataaaaggtgtcttctagcaaaac 23472515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 39077373 - 39077439
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||  |||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  39077373 ttttaacaaatgttcatagaataacttgctaaaagacaccttcataaaaggtgtcttctaaaaaaac 39077439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 3210839 - 3210911
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccactttttaa 173  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||| |||||||||||||||    
T  3210839 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgttatttccactttttaa 3210911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 10078486 - 10078415
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  | |||||||||||||| |||||||||||| || |||||||||||||||||||    
T  10078486 ggttttgctagaagccacccaagaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 10078415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 16930901 - 16930960
Alignment:
Q  201 aaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  16930901 aaatgctcatagaataacttgctaaaagacaccttcataaaaggtatcttctatcaaaac 16930960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 19922695 - 19922624
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || ||||||||||||| |||||    
T  19922695 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacctttta 19922624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 28539348 - 28539277
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| ||| ||||||||||||||||| ||||||||| || ||||| |||||| |||||||||    
T  28539348 ggttttgctagaagccacctatgaaggtgtcttttagcaacccacatctcaatgtttgattttcacttttta 28539277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 38498355 - 38498406
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  38498355 atagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 38498406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 253923 - 253993
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||||| |||||||||    
T  253923 gttttgctagaattcacctatgaaggtgtcttttagcaacctacacctcaaggtgtgattttcacttttta 253993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 661935 - 661865
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||||| |||||||||    
T  661935 gttttgctagaattcacctatgaaggtgtcttttagcaacctacacctcaaggtgtgattttcacttttta 661865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 847733 - 847663
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||||| |||||||||    
T  847733 gttttgctagaattcacctatgaaggtgtcttttagcaacctacacctcaaggtgtgattttcacttttta 847663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 26912412 - 26912478
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |||||||||||||||  |||||||||| || |||||| |||||||||| ||||||    
T  26912412 ttttagcaaatgctcatagaataacttgttaaaagacacattcataaaatgtgtcttctagcaaaac 26912478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 1271118 - 1271186
Alignment:
Q  196 ttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    |||||||||||  |||| |||||||  ||||| ||||||||||||| ||||||||||| ||||||||||    
T  1271118 ttagcaaatacatataggataacttgttaaaaaacacctttataaagggtgtcttctagcaaaactcat 1271186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 16784378 - 16784330
Alignment:
Q  213 aataacttcctaaaagacacctttataaaaggtgtcttctaacaaaact 261  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  16784378 aataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaact 16784330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 40067453 - 40067525
Alignment:
Q  100 aggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||||||||||  |||||| |||||||||  |||||||| || || |||||||||||||||||||    
T  40067453 aggttttgctagaagtcacccatgaagatgtcttttagtaacccacatctcaaggtgtgatttccacttttta 40067525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 14371607 - 14371658
Alignment:
Q  207 tcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaa 258  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||    
T  14371607 tcatataataacttgctaaaagacaccttcataaaaggtgtcttctagcaaa 14371658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 14916653 - 14916704
Alignment:
Q  120 tatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttt 171  Q
    ||||||||||||||||| |||| |||||||||| ||||||||| ||||||||    
T  14916653 tatgaaggtgtcttttagcaactcacaccttaaggtgtgattttcacttttt 14916704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 16645472 - 16645523
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| ||||||| |||| || |||||||||||||||||||    
T  16645472 atgaaggtgtcttttagcaacccatacctcaaggtgtgatttccacttttta 16645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 3210923 - 3210965
Alignment:
Q  222 ctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    
T  3210923 ctaaaagacaccttcataaaaggtgtcttctagcaaaactcat 3210965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 28539230 - 28539164
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| |||||| |||||||| ||||||||||  || |||||| |||||||||||||||||    
T  28539230 ttttaacaaatgctcataaaataacttgctaaaagacatattcataaaatgtgtcttctaacaaaac 28539164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 12295256 - 12295321
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||| ||||| || |||||||||||| ||||||||||| || |||||||||||||| || |||||    
T  12295256 ttttaacaaatgctaatagaataacttgctaaaagacacattcataaaaggtgtcttatagcaaaa 12295321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 9478889 - 9478825
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||| | ||||||| |||||||||||| || |||||||||||||||||||    
T  9478889 ctagaagccacccatgaagatatcttttagcaacccacacctcaaagtgtgatttccacttttta 9478825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 9479580 - 9479528
Alignment:
Q  120 tatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||||||||||| ||| ||||||  ||||||||||||||||||    
T  9479580 tatgaatgtgtcttttaacaactcaccccttaaattgtgatttccacttttta 9479528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 5224366 - 5224299
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaact 261  Q
    ||||| |||||  ||||||||||||||  ||||||||||||| |||||| ||||||| || |||||||    
T  5224366 ttttaacaaatgttcatagaataacttgttaaaagacaccttcataaaaagtgtcttatagcaaaact 5224299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 12176311 - 12176362
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  12176311 ataggataacttgctaaaacacaccttcataaaaggtgtcttctagcaaaac 12176362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 12420739 - 12420790
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  12420739 ataggataacttgctaaaacacaccttcataaaaggtgtcttctagcaaaac 12420790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 42806257 - 42806206
Alignment:
Q  213 aataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||| || |||||||||| ||| ||||||||||||||||| ||||||||||    
T  42806257 aataatttgctaaaagacatcttcataaaaggtgtcttctagcaaaactcat 42806206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 42806376 - 42806325
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| |||||||||| ||| |||||||| || |||||||||||||||||||    
T  42806376 atgaaagtgtcttttagcaatccacacctcaaggtgtgatttccacttttta 42806325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 16645536 - 16645574
Alignment:
Q  222 ctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  16645536 ctaaaagacaccttcataaaaggtgtcttctagcaaaac 16645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 31272864 - 31272930
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||||||||||||||| ||  ||||| ||||||| |||||| |||||||| || |||||    
T  31272864 ttttaacaaatactcatagaataatttgttaaaaaacaccttcataaaatgtgtcttcgaataaaac 31272930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 39589994 - 39590032
Alignment:
Q  222 ctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  39589994 ctaaaagacaccttcataaaaggtgtcttctagcaaaac 39590032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 33568040 - 33568101
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgattt 162  Q
    |||||| |||||||||||  |||||||||| ||||| ||| |||||||| || |||||||||    
T  33568040 ggttttactagaagtcacccatgaaggtgttttttagcaatccacacctcaaggtgtgattt 33568101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 12295138 - 12295178
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacacc 148  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  12295138 ctagaagtcacccatgaaggtgtcttttagcaacccacacc 12295178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 28969095 - 28969143
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| ||||| |||||||||| | || |||||||||||||||||||    
T  28969095 aaggtgtattttagcaacccacacttcaaggtgtgatttccacttttta 28969143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 44874091 - 44874031
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccactt 168  Q
    ||||||| |||  |||||||||||||||| ||| ||||||| ||| || ||||||||||||    
T  44874091 ctagaagccacccatgaaggtgtcttttagcaatccacaccctaaggtttgatttccactt 44874031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 13387050 - 13386984
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  13387050 ttttagcaaatgctcatagaataacttgctaaaagacacctttataaaatgtgtcttctagcaaaac 13386984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 48860816 - 48860882
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  48860816 ttttaacaaatgctcatagaataacttgctaaaagacacctttataaaaggtgtcttctagcaaaac 48860882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 34728313 - 34728379
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  34728313 ttttagcaaatgcttatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 34728379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 38963335 - 38963400
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||| |||||    
T  38963335 ttttagcaaatgctcatagaataacttgctaaaagacacattcataaaaggtgtcttctagcaaaa 38963400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 32626155 - 32626211
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtctt 250  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||    
T  32626155 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaaggtgtctt 32626211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 51702634 - 51702570
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| ||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  51702634 ctagaagccacttatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 51702570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 32626037 - 32626108
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  32626037 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 32626108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 34728195 - 34728266
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  34728195 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 34728266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 51682534 - 51682605
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  51682534 ggttttgctagaagccactcatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 51682605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 42434322 - 42434388
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| ||||||||||||||| |||||| |||||||  |||||||||||||||||||||||    
T  42434322 ttttaacaaatgctcatagaataacttgctaaaaaacaccttcctaaaaggtgtcttctaacaaaac 42434388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 51702523 - 51702457
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| ||||||||||| || |||| |||||||||||| ||||||    
T  51702523 ttttagcaaatgctcatagaataacttgctaaaagacactttcataagaggtgtcttctagcaaaac 51702457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 6137437 - 6137373
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  6137437 ctagaagccactcatgaaggtgtcttttagcaactcacacctcaatgtgtgatttccacttttta 6137373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 6137326 - 6137260
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| || |||||||||||| ||||||||||| || ||||||||||||||||| ||||||    
T  6137326 ttttaacaaatgctaatagaataacttgctaaaagacacattcataaaaggtgtcttctagcaaaac 6137260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 11020441 - 11020507
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||  |||||||||||||| |||||| ||||||| |||||||||||||| |||||||||    
T  11020441 ttttaacaaatgttcatagaataacttgctaaaacacaccttcataaaaggtgtcttttaacaaaac 11020507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 20835773 - 20835707
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| || |||||||||||| |||||||||||||| |||||||||||||| || ||||||    
T  20835773 ttttaacaaatgctaatagaataacttgctaaaagacaccttcataaaaggtgtcttatagcaaaac 20835707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 47960388 - 47960454
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |  |||| ||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  47960388 ttttagcaaatgcctataggataacttgctaaaagacaccttcataaaaggtgtcttctaaccaaac 47960454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 13372555 - 13372486
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttt 171  Q
    ||||| ||||||  |||| |||||||||||||||||||||| |||||| || || |||||||||||||||    
T  13372555 gttttgctagaaaccacacatgaaggtgtcttttaacaacctacacctcaaggtatgatttccacttttt 13372486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 13382756 - 13382687
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttt 171  Q
    ||||| ||||||  |||| |||||||||||||||||||||| |||||| || || |||||||||||||||    
T  13382756 gttttgctagaaaccacacatgaaggtgtcttttaacaacctacacctcaaggtatgatttccacttttt 13382687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 33117580 - 33117511
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactca 263  Q
    |||||||||||  |||||||||| ||| |||||| ||||||| ||||||||| ||||||| |||||||||    
T  33117580 ttttagcaaatgatcatagaatatcttgctaaaatacaccttcataaaaggtatcttctagcaaaactca 33117511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 28589211 - 28589283
Alignment:
Q  100 aggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| ||||||| |||  |||||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  28589211 aggttttgctagaagccacccatgaaggtgtcttttaacaatccatacctcaaggtgtgattttcacttttta 28589283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 40480024 - 40479960
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||  |||||||||||||||| |||| ||| ||| || |||||||||||||||||||    
T  40480024 ctagaagtcacccatgaaggtgtcttttagcaactcacgcctcaaggtgtgatttccacttttta 40479960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 20503617 - 20503546
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||| ||||| |||||||| ||| || |||||||||||||||||||    
T  20503617 ggttttgctagaagccactcatgaaggtgttttttagcaacccacgcctcaaggtgtgatttccacttttta 20503546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 27907154 - 27907103
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| || ||||||||| || |||||||||||||||||||    
T  27907154 atgaaggtgtcttttagcagcccacacctcaaggtgtgatttccacttttta 27907103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 38427177 - 38427228
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||| ||||||||||| || ||||||||||||||||| ||||||    
T  38427177 atagaataacttgctaaaagacactttcataaaaggtgtcttctagcaaaac 38427228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 38962569 - 38962518
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||| |||||||||||||||||| || ||||||||| |||||||||    
T  38962569 atgaaggtgttttttaacaacccacacctcaaggtgtgattttcacttttta 38962518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 20503499 - 20503433
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||  |||||||||| ||| |||||| ||||||| |||||||||| |||||| ||||||    
T  20503499 ttttagcaaatgatcatagaatatcttgctaaaaaacaccttcataaaaggtgccttctagcaaaac 20503433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 32090056 - 32090122
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| || ||| |||||||| |||||||||||||| ||||||| ||||||||| ||||||    
T  32090056 ttttaacaaatgctaataaaataacttgctaaaagacaccttcataaaagatgtcttctagcaaaac 32090122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 43837783 - 43837849
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |  |||| ||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  43837783 ttttagcaaatgcctataggataacttgctaaacgacaccttcataaaaggtgtcttctagcaaaac 43837849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 51682652 - 51682718
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||  |||||||||||||| |||||| ||||||| ||||||||||| ||||| ||||||    
T  51682652 ttttaacaaatgttcatagaataacttgctaaaaaacaccttcataaaaggtgttttctagcaaaac 51682718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 54158163 - 54158117
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  54158163 ataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 54158117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39703362 - 39703325
Alignment:
Q  1 acctaatgttgatgaagagaaatttgaagtcacgaatt 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  39703362 acctaatgctgatgaagagaaatttgaagtcacgaatt 39703325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 43837664 - 43837737
Alignment:
Q  100 aggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatt-tccacttttta 172  Q
    ||||||| ||||||| |||  |||||||||||||||| ||| |||||||| || |||||||| |||||||||||    
T  43837664 aggttttgctagaagccacccatgaaggtgtcttttagcaatccacacctcaaggtgtgattatccacttttta 43837737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 6944654 - 6944694
Alignment:
Q  195 tttagcaaatactcatagaataacttcctaaaagacacctt 235  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  6944654 tttagcaaatgctcatagaataacttgctaaaagacacctt 6944694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 11020342 - 11020394
Alignment:
Q  120 tatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| |||||||||||| ||||||||| || || |||||||||||||||||||    
T  11020342 tatggaggtgtcttttagcaacccacatctcaaggtgtgatttccacttttta 11020394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 20835884 - 20835820
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| |||||||||||| || | |||||||||| ||||||    
T  20835884 ctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggggtgatttccatttttta 20835820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 34041285 - 34041353
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactc 262  Q
    ||||| ||||| || ||||| |||||| ||||||||||| || |||||| |||||||||| ||||||||    
T  34041285 ttttaacaaatgcttatagagtaacttgctaaaagacacattcataaaatgtgtcttctagcaaaactc 34041353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 40875373 - 40875325
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||||| ||||||||||||||| || |||||| |||||||||    
T  40875373 aaggtgtcttttagcaacccacaccttaaggtttgattttcacttttta 40875325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 5975716 - 5975657
Alignment:
Q  200 caaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||| || ||| |||||||| |||||||||||||| |||||| |||||||||| |||||    
T  5975716 caaatgctaatataataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaa 5975657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 22254274 - 22254223
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||| |||||||||||||| ||||||  ||||||||| ||||||    
T  22254274 atagaataacttgctaaaagacaccttcataaaaaatgtcttctagcaaaac 22254223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 33117698 - 33117627
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  ||||||||||||||||  |||||||||||||| |||||  || |||||||||    
T  33117698 ggttttgctagaagccactcatgaaggtgtcttttagaaacccacaccttaaagtgtgcatttcacttttta 33117627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 34041187 - 34041238
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| ||  |||||||| |||||||||    
T  34041187 atgaaggtgtcttttagcaacccacacctcaagttgtgattttcacttttta 34041238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 32868051 - 32868001
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaagg 244  Q
    ||||||||||| |||||||||||||||  |||||||||| |||| ||||||    
T  32868051 ttttagcaaatgctcatagaataacttgttaaaagacacatttacaaaagg 32868001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 13372438 - 13372397
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctt 235  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||    
T  13372438 ttttagcaaatgctcatggaataacttgctaaaagacacctt 13372397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 13382639 - 13382598
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctt 235  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||    
T  13382639 ttttagcaaatgctcatggaataacttgctaaaagacacctt 13382598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 19329521 - 19329473
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| ||||||| ||||||||| || || |||||||||||||||||||    
T  19329521 aaggtctcttttagcaacccacatctcaaggtgtgatttccacttttta 19329473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 1838751 - 1838821
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||||||||| ||||||||||||||| ||||||||||| || |||||| |||||||||||||||||||||    
T  1838751 ttttagcaaatgctcatagaataacttactaaaagacactttcataaaatgtgtcttctaacaaaactcat 1838821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 1627647 - 1627718
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  1627647 ggtttttctagaagtcacccatgaaggtgtcttttagtaacccacacctcaaggtgtgatttccacttttta 1627718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 1627764 - 1627831
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaact 261  Q
    |||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  1627764 ttttagcaaatgttcatagaataacttgctaaaagacatctttataaaaggtgtcttctagcaaaact 1627831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 1838633 - 1838703
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| ||||||| |||  |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  1838633 gttttgctagaagccactcatgaaggtgtcttttagcaacccacacctcaatgtgtgatttccacttttta 1838703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 25825388 - 25825454
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  25825388 ttttaacaaatgctcataaaataacttgctaaaagacaccttcataaaaggtgtcttctaacaaaac 25825454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 14463386 - 14463321
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||    
T  14463386 ttttagcaaatgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaa 14463321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 44720117 - 44720061
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcatt 265  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  44720117 atagaataacttgctaaaagacaccttcataaaaggtgtcttctaacaaaacccatt 44720061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 9005495 - 9005425
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||    
T  9005495 ttttaacaaatgctgatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaattcat 9005425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 24992844 - 24992908
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  24992844 ctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 24992908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 26213789 - 26213857
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactc 262  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||  ||||| |||||||||| ||||||||    
T  26213789 ttttaacaaatgctcatagaataacttgctaaaagacaccttcgtaaaatgtgtcttctagcaaaactc 26213857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 1469667 - 1469738
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  ||||| |||||||||| |||||||||||| || |||||||||||||||||||    
T  1469667 ggttttgctagaagccacccatgaatgtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 1469738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 25671067 - 25671134
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaact 261  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||  |||||| || |||||||    
T  25671067 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaatatgtcttttagcaaaact 25671134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 25825290 - 25825341
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  25825290 atgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 25825341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 2964952 - 2965018
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||  |||||||||||||| ||| |||||||||| ||||| ||||||||||| ||||||    
T  2964952 ttttagcaaatgttcatagaataacttgctagaagacaccttcataaacggtgtcttctagcaaaac 2965018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 8549535 - 8549605
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| ||||||||||| ||||||||||| ||||| ||| |||||||| || ||||||||| |||||||||    
T  8549535 gttttgctagaagtcacctatgaaggtgtattttagcaatccacacctcaaggtgtgattttcacttttta 8549605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 49659958 - 49659892
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||  |||||||||||||| |||||| ||||||| || |||||||||||||||||||||    
T  49659958 ttttaacaaatgttcatagaataacttgctaaaaaacaccttcatgaaaggtgtcttctaacaaaac 49659892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 17452986 - 17453043
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttc 251  Q
    ||||||||||| ||||||||||| ||| |||||||||||||| |||||| ||||||||    
T  17452986 ttttagcaaatgctcatagaatagcttgctaaaagacaccttcataaaaagtgtcttc 17453043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 38509712 - 38509776
Alignment:
Q  196 ttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||| || |||| |||| || |||||||||||||| |||||| |||||||||||||||||    
T  38509712 ttagcaaatgcttataggataatttgctaaaagacaccttcataaaatgtgtcttctaacaaaac 38509776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 44720230 - 44720178
Alignment:
Q  120 tatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||||||||| |||| |||||||||| ||||||||| |||||||||    
T  44720230 tatgaaggtgtcttttagcaactcacaccttaaggtgtgattttcacttttta 44720178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 14463484 - 14463433
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||||||| ||||| ||||||||||||||| || ||||||    
T  14463484 atgaaggtgtcttttaacaatccacatcttaatgtgtgattttcatttttta 14463433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 26284479 - 26284550
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||| ||||||||||||| |||||||| || ||||||||| |||||||||    
T  26284479 ggttttgctagaagccacccatgaagatgtcttttaacaatccacacctcaaggtgtgattttcacttttta 26284550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 1406776 - 1406710
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||  ||||||||||| || |||||||||||||| |||||| |||||||||| ||||||    
T  1406776 ttttaccaaatgttcatagaataatttgctaaaagacaccttcataaaatgtgtcttctagcaaaac 1406710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 5226866 - 5226801
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||| |||||||||||| ||||||||  ||||||||||||| |||||| ||||||| || |||||    
T  5226866 ttttaacaaatactcatataataacttgttaaaagacaccttcataaaatgtgtcttttagcaaaa 5226801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 40461048 - 40460983
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||| |||||  ||||| |||||||| |||||||||||||| |||||| |||||||||| |||||    
T  40461048 ttttaacaaatgttcatataataacttgctaaaagacaccttcataaaaagtgtcttctatcaaaa 40460983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 15660855 - 15660915
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccactt 168  Q
    ||||||| |||  |||||||||||||||| |||||||||||| || ||||||||| |||||    
T  15660855 ctagaagccacccatgaaggtgtcttttagcaacccacacctcaaagtgtgattttcactt 15660915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 26842910 - 26842862
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| |||||||| |||||||||||| ||||||||||||||| ||||||    
T  26842910 aaggcgtcttttagcaacccacacctcaatgtgtgatttccatttttta 26842862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 26897430 - 26897367
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  ||||||||| |||||| ||||| ||||||||| |||||||||||||||||||    
T  26897430 ctagaagccacccatgaaggtgacttttagcaacc-acaccttaaggtgtgatttccacttttta 26897367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 43939542 - 43939590
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaa 242  Q
    ||||| ||||| ||||||||||||||| |||||||||||||| ||||||    
T  43939542 ttttaacaaatgctcatagaataacttgctaaaagacaccttcataaaa 43939590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 1406874 - 1406823
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||| |||||||||| |||| || || |||||||||||||||||||    
T  1406874 atgaaggtgttttttaacaactcacatctcaaagtgtgatttccacttttta 1406823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 10769741 - 10769812
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  ||||||||| ||| || ||| |||||||| || |||||||||||||||||||    
T  10769741 ggttttgctagaagccacccatgaaggtgccttatagcaatccacacctgaaggtgtgatttccacttttta 10769812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 41146609 - 41146550
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttcta 253  Q
    ||||||||||| |||||||||||||||  ||||| |||| || |||||| ||||||||||    
T  41146609 ttttagcaaatgctcatagaataacttggtaaaaaacactttcataaaaagtgtcttcta 41146550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 42470665 - 42470614
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||  ||||||| || |||||||||||||||||||    
T  42470665 atgaaggtgtcttttagcaattcacacctcaaggtgtgatttccacttttta 42470614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 43939444 - 43939495
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| ||| |||||||| || ||||||||| |||||||||    
T  43939444 atgaaggtgtcttttagcaatccacacctcaaggtgtgattttcacttttta 43939495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 49660452 - 49660401
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||| ||||||| ||  ||||||||||||||||||    
T  49660452 atgaaggtgtcttttagcaactcacacctcaagttgtgatttccacttttta 49660401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 1469751 - 1469789
Alignment:
Q  222 ctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  1469751 ctaaaagacaccttcataaaaggtgtcttctagcaaaac 1469789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 4105687 - 4105617
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| |||||| ||| | ||||| |||||||||| |||  || ||||||||||||||||| |||||||||    
T  4105687 gttttgctagaaatcatacatgaaagtgtcttttagcaattcataccttaatgtgtgattttcacttttta 4105617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 7336148 - 7336214
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| || ||||| ||| || |||||||||||||| |||||| |||||||||| ||||||    
T  7336148 ttttaacaaatgcttatagagtaatttgctaaaagacaccttaataaaatgtgtcttctagcaaaac 7336214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 30414192 - 30414258
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| || ||| |||||||| |||||| ||||||| ||||||||||| ||||| ||||||    
T  30414192 ttttaacaaatgctaatataataacttgctaaaaaacaccttcataaaaggtgtattctagcaaaac 30414258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 17168222 - 17168157
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||||||||| |  ||||||||||||  ||||||||||||| ||||  ||||||||||| |||||    
T  17168222 ttttagcaaatgcatatagaataacttgttaaaagacaccttcataattggtgtcttctagcaaaa 17168157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 30819603 - 30819668
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||||||||| |  |||| |||| || |||||| ||||||| ||||||||||||||||| |||||    
T  30819603 ttttagcaaatgcctataggataatttgctaaaaaacaccttcataaaaggtgtcttctagcaaaa 30819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 9338886 - 9338838
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||||| |||||||||| | || |||||||||| ||||||||    
T  9338886 aaggtgtcttttagcaacccacacttcaaggtgtgatttctacttttta 9338838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 30414081 - 30414145
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| ||||||||| || || |||| ||||||| ||||||    
T  30414081 ctagaagccacccatgaaggtgtcttttagcaacccacatctcaaggtgttatttccatttttta 30414145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 40461139 - 40461095
Alignment:
Q  128 tgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||| |||||||||| ||||  ||||||||||||||||||    
T  40461139 tgtcttttaccaacccacactttaagatgtgatttccacttttta 40461095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 35118 - 35054
Alignment:
Q  196 ttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  35118 ttagcaaatgctcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 35054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 392590 - 392519
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| ||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  392590 ggttttgctagaagccacctacgaaggtgtcttttagcaacccacaccttaaggtgtgatttccacttttta 392519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 392472 - 392406
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||    
T  392472 ttttagcaaatgctcatagaataacttgctaaaagacatcttcataaaaggtgtcttctagcaaaac 392406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 8674604 - 8674533
Alignment:
Q  193 gttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    |||||||||||| |||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||||    
T  8674604 gttttagcaaatgctcataaaataacttgctaaaagacactttcataaaaggtgtcttctagcaaaactcat 8674533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 3283365 - 3283431
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||    
T  3283365 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaac 3283431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 42092874 - 42092808
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  42092874 ttttaacaaagactcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 42092808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 8351119 - 8351060
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttcta 253  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  8351119 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaaagtgtcttcta 8351060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 13700245 - 13700296
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  13700245 atgaaggtgtcttttagcaacccacacctcaatgtgtgatttccacttttta 13700296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 54253770 - 54253841
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  54253770 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 54253841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 21395954 - 21396020
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  21395954 ttttaacaaatgctcatagaataacttgctaaaaaacaccttcataaaaggtgtcttctagcaaaac 21396020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 45408313 - 45408247
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||    
T  45408313 ttttagcaaatgctcatagaataacttgctaaaagacactttcataaaaggtgttttctagcaaaac 45408247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 54160455 - 54160389
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  54160455 ttttaacaaatgcttatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 54160389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 34673561 - 34673625
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaa 258  Q
    ||||| |||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| ||||    
T  34673561 ttttaacaaatactaatataataacttgctaaaagacaccttcataaaaggtgtcttctagcaaa 34673625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 34673339 - 34673390
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  34673339 atgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 34673390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 39328577 - 39328526
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  39328577 atgaaggtgtcttttaacaatccacacctcaaggtgtgatttccacttttta 39328526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 50090825 - 50090876
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  50090825 atgaaggtgtcttttagcaatccacaccttaaggtgtgatttccacttttta 50090876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 50090938 - 50090989
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  50090938 atagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 50090989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 35711921 - 35711987
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||||| |  ||||| |||||||||| ||||||    
T  35711921 ttttagcaaatgctcatagaataacttgctaaaagacaccctcgtaaaatgtgtcttctagcaaaac 35711987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 54411885 - 54411951
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||  |||||||||| ||| |||||| ||||||| ||||||||||||||||| ||||||    
T  54411885 ttttagcaaatgatcatagaatatcttgctaaaaaacaccttcataaaaggtgtcttctagcaaaac 54411951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 27027332 - 27027381
Alignment:
Q  213 aataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactc 262  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  27027332 aataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaactc 27027381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 5232596 - 5232660
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||  ||| || |||||||||| ||||||||||||||| |||||||| ||||||||||    
T  5232596 ctagaagtcatctataaatgtgtcttttagcaacccacaccttaaggtgtgattcccacttttta 5232660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 9665487 - 9665423
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| ||| |||||| |||||||||| ||||||| |||| |||||||||||| |||||||||    
T  9665487 ctagaagccacctatgaatgtgtcttttagcaacccatacctcaatgtgtgattttcacttttta 9665423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 41355591 - 41355527
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| ||||||||| || || |||||||||||||||||||    
T  41355591 ctagaagccacccatgaaggtgtcttttagcaacccacaactcaaggtgtgatttccacttttta 41355527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 35280593 - 35280522
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||| ||||| ||||||||| || || |||||||||||||||||||    
T  35280593 ggttttgctagaagccacccatgaaggtgtgttttagcaacccacaactcaaggtgtgatttccacttttta 35280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 52945734 - 52945683
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||| ||||||| || |||||||||||||||||||    
T  52945734 atgaaggtgtcttttagcaactcacacctcaaagtgtgatttccacttttta 52945683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 13700343 - 13700409
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |||| ||||||||||  ||||| ||||||| |||||| |||||||||| ||||||    
T  13700343 ttttagcaaatgctcaaagaataacttattaaaaaacaccttcataaaatgtgtcttctagcaaaac 13700409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 19855531 - 19855473
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttct 252  Q
    ||||||||||| ||| ||||||||||| |||| ||||||||| ||||||||| ||||||    
T  19855531 ttttagcaaatgctcgtagaataacttgctaatagacaccttcataaaaggtttcttct 19855473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 54253888 - 54253954
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||| |||| ||||||||||||||| |||||| ||||||| |||||| | |||||||| ||||||    
T  54253888 ttttaggaaatgctcatagaataacttgctaaaatacaccttcataaaatgcgtcttctagcaaaac 54253954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 4126159 - 4126086
Alignment:
Q  100 aggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccactttttaa 173  Q
    ||||||| ||||||| ||   ||||||||||||||||  || |||||||| || ||||||||||||||||||||    
T  4126159 aggttttgctagaagccatccatgaaggtgtcttttagtaatccacacctcaaggtgtgatttccactttttaa 4126086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 39328464 - 39328415
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaa 258  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||| ||||    
T  39328464 ataggataacttgctaaaagacaccttcataaaaggtgtcttctagcaaa 39328415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 46770541 - 46770492
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactca 263  Q
    ||||||| |||||||||||||| ||||| ||||||||||| |||||||||    
T  46770541 ataacttgctaaaagacaccttcataaagggtgtcttctagcaaaactca 46770492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 54411769 - 54411838
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||| |||  ||||| |||||||||| ||||| |||||| || |||||||||||||||||||    
T  54411769 ttttgctagaagccactcatgaaagtgtcttttagcaacctacacctcaaggtgtgatttccacttttta 54411838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 20513124 - 20513180
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtctt 250  Q
    ||||| ||||| |||||||||||| || |||||||||||||| |||||| |||||||    
T  20513124 ttttaacaaatgctcatagaataaattgctaaaagacaccttcataaaaagtgtctt 20513180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 46969880 - 46969944
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| |||||||||| | || || ||||||||||||||||    
T  46969880 ctagaagccacccatgaaggtgtcttttagcaacccacacatcaaggtatgatttccacttttta 46969944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 2911699 - 2911652
Alignment:
Q  123 gaaggtgtcttttaacaacccacaccttaatgtgtgatttccactttt 170  Q
    |||||||||||||| |||  |||||||||||||||||||| |||||||    
T  2911699 gaaggtgtcttttagcaattcacaccttaatgtgtgattttcactttt 2911652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 3283267 - 3283318
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| || |||||||||  ||||||||    
T  3283267 atgaaggtgtcttttagcaacccacacctcaaggtgtgatttttacttttta 3283318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 9665361 - 9665310
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||||  ||||||||||||| ||| |||||||||| |||||||||    
T  9665361 atagaataacttgttaaaagacaccttcatagaaggtgtcttttaacaaaac 9665310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 11238831 - 11238780
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| |||||||||| |||||||||||| || |||||||||| ||||||||    
T  11238831 atgaatgtgtcttttagcaacccacacctcaaggtgtgatttctacttttta 11238780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 21395856 - 21395907
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||||||| ||||||||| ||| || ||||||||| |||||||||    
T  21395856 atgaaggtgtcttttgacaacccacgcctcaaggtgtgattttcacttttta 21395907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 36418765 - 36418714
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||| ||||||| ||||||||||| || ||||||||||||||||| ||||||    
T  36418765 ataggataacttgctaaaagacactttcataaaaggtgtcttctagcaaaac 36418714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 45408486 - 45408443
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccact 167  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||    
T  45408486 aaggtgtcttttaacaactcacgccttaaggtgtgatttccact 45408443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 6125817 - 6125771
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||| |||||||||||||| |||||| |||||||||| ||||||    
T  6125817 ataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaac 6125771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 39866794 - 39866836
Alignment:
Q  130 tcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||||||||||| || |||||||||||||||||||    
T  39866794 tcttttagcaacccacacctcaaggtgtgatttccacttttta 39866836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 45408406 - 45408360
Alignment:
Q  126 ggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||| |||| ||||||| || |||||||||||||||||||    
T  45408406 ggtgtcttttagcaacgcacacctcaaggtgtgatttccacttttta 45408360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 4126040 - 4125999
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctt 235  Q
    ||||||||||| |||||||||||||||  |||||||||||||    
T  4126040 ttttagcaaatgctcatagaataacttgttaaaagacacctt 4125999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 11238733 - 11238692
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctt 235  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||    
T  11238733 ttttaacaaatgctcatagaataacttgctaaaagacacctt 11238692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 19855646 - 19855578
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| ||| | ||||||||||||||| ||| ||||||||    |||||||||||||||||||    
T  19855646 ggttttgctagaagccacctctgaaggtgtcttttagcaatccacacct---cgtgtgatttccacttttta 19855578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 35180739 - 35180686
Alignment:
Q  120 tatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccactttttaa 173  Q
    |||||||||||||||||| ||| || |||| || |||||||||| |||||||||    
T  35180739 tatgaaggtgtcttttaaaaactcatacctcaaggtgtgatttctactttttaa 35180686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 27037965 - 27038029
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  ||||||||||||||||  ||||| ||||| || | |||||||||||||||||    
T  27037965 ctagaagccacccatgaaggtgtcttttagaaacccccacctcaaggcgtgatttccacttttta 27038029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 34673437 - 34673485
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaa 242  Q
    ||||| |||||||| ||| |||||||| |||||||||||||| ||||||    
T  34673437 ttttaacaaatactaatataataacttgctaaaagacaccttcataaaa 34673485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 34673499 - 34673547
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaa 242  Q
    ||||| |||||||| ||| |||||||| |||||||||||||| ||||||    
T  34673499 ttttaacaaatactaatataataacttgctaaaagacaccttcataaaa 34673547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 37702665 - 37702729
Alignment:
Q  196 ttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||| |  |||| ||||||| ||||||||||| || | ||||||||||||||| ||||||    
T  37702665 ttagcaaatgccaataggataacttgctaaaagacactttcaaaaaaggtgtcttctagcaaaac 37702729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 12725804 - 12725871
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaact 261  Q
    |||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  12725804 ttttagtaaatgctcatagaataacttgctaaaagacatctttataaaaggtgtcttctagcaaaact 12725871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 18924626 - 18924696
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||| |||||  |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  18924626 ttttaacaaatgttcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaactcat 18924696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 29471721 - 29471787
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  29471721 ttttagcaaatgttcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 29471787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 9548297 - 9548363
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||| || ||||||    
T  9548297 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaagatgtcttatagcaaaac 9548363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 10664778 - 10664848
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||| || ||||| ||||    
T  10664778 ttttagcaaatgctcatagaataacttgctaaaagacaccttcataaaatgtgtcttatagcaaaattcat 10664848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 10862692 - 10862628
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  10862692 ctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 10862628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 16719814 - 16719885
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcatt 265  Q
    ||||| |||||| |||| ||||||||  |||||||||||||| ||||||||||||||||| |||||| ||||    
T  16719814 ttttaacaaatattcatggaataactagctaaaagacaccttcataaaaggtgtcttctagcaaaacccatt 16719885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 18924508 - 18924579
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| ||||||| |||| || |||||||||||||||||||    
T  18924508 ggttttgctagaagccacccatgaaggtgtcttttagcaacccatacctcaaggtgtgatttccacttttta 18924579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 34450418 - 34450367
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  34450418 atgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 34450367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 9548181 - 9548250
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| ||  ||||||||||||||||||    
T  9548181 ttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaagatgtgatttccacttttta 9548250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 21950706 - 21950650
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtctt 250  Q
    ||||| ||||| ||||||||||||||| |||||||||||||| ||||||| ||||||    
T  21950706 ttttaacaaatgctcatagaataacttgctaaaagacaccttcataaaagatgtctt 21950650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 27097149 - 27097085
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||||||||||||  |||||||||||| || |||||||||||||||||||    
T  27097149 ctagaagccacccatgaaggtgtcttttggcaacccacacctcaaggtgtgatttccacttttta 27097085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 10664680 - 10664731
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  10664680 atgaaggtgtcttttagtaacccacacctcaaggtgtgatttccacttttta 10664731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 29471603 - 29471674
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| ||| |||||||| || | |||||||||||||||||    
T  29471603 ggttttgctagaagccacccatgaaggtgtcttttagcaatccacacctcaaggagtgatttccacttttta 29471674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 39089205 - 39089256
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||||  |||||||||| || ||||||||||||||||||||||||    
T  39089205 atagaataacttgttaaaagacacattcataaaaggtgtcttctaacaaaac 39089256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 1750005 - 1750071
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| || |||||||||| | |||||||||||||| |||||| |||||||||| ||||||    
T  1750005 ttttaacaaatgctaatagaataacctgctaaaagacaccttcataaaatgtgtcttctagcaaaac 1750071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 4206476 - 4206426
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||||| |||||||||||||| |||||| |||||||||| ||||||||||    
T  4206476 ataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaactcat 4206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 24314281 - 24314215
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| |||||| ||||| || |||||||||||||||||||||||||| || || ||||||    
T  24314281 ttttaacaaatgctcataaaataatttgctaaaagacacctttataaaaggtgtattttagcaaaac 24314215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 42090481 - 42090411
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    ||||| |||||  ||||||||||| || ||||||||||| || ||||||||||||||| | ||||||||||    
T  42090481 ttttaacaaatgttcatagaataatttgctaaaagacactttcataaaaggtgtcttccagcaaaactcat 42090411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 14747350 - 14747399
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccactttttaa 173  Q
    ||||||||||||| ||||||||||||||| ||||||||| || |||||||    
T  14747350 aaggtgtcttttagcaacccacaccttaaggtgtgattttcattttttaa 14747399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 33740286 - 33740242
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttcta 253  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||    
T  33740286 ataggataacttgctaaaagacaccttcataaaaggtgtcttcta 33740242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 36779775 - 36779843
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttt 171  Q
    |||| ||||||| || | |||||| ||||||||| ||| | |||||| |||||||||||||||||||||    
T  36779775 ttttgctagaagccatacatgaagttgtcttttagcaatctacacctcaatgtgtgatttccacttttt 36779843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 39435047 - 39435091
Alignment:
Q  223 taaaagacacctttataaaaggtgtcttctaacaaaactcattat 267  Q
    |||||||||| || ||||||||||||||||| |||||||||||||    
T  39435047 taaaagacactttcataaaaggtgtcttctagcaaaactcattat 39435091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 44539948 - 44539996
Alignment:
Q  211 agaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    |||||||||| ||||| |||||||| ||||||| |||||||||||||||    
T  44539948 agaataacttgctaaatgacaccttcataaaagatgtcttctaacaaaa 44539996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 12725706 - 12725757
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| ||  |||||||| || |||||||||||||||||||    
T  12725706 atgaaggtgtcttttagcaggccacacctcaaagtgtgatttccacttttta 12725757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 6231259 - 6231217
Alignment:
Q  222 ctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||    
T  6231259 ctaaaagacaccttcataaatggtgtcttctagcaaaactcat 6231217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 10862615 - 10862577
Alignment:
Q  222 ctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  10862615 ctaaaagacaccttcataaaaggtgtcttctagcaaaac 10862577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 36779859 - 36779901
Alignment:
Q  222 ctaaaagacacctttataaaaggtgtcttctaacaaaactcat 264  Q
    |||||||||||||| |||||||||||||||||  |||||||||    
T  36779859 ctaaaagacaccttcataaaaggtgtcttctaggaaaactcat 36779901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 21950822 - 21950753
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||||||   ||||| |||||||||| |||||||||||| || || |||||| |||||||||    
T  21950822 ttttgctagaagtcatccatgaaagtgtcttttagcaacccacacctcaaggtatgattttcacttttta 21950753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 17689430 - 17689496
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| ||||||||||||| | |||||||||| |||||||||| |||||||||||||||||    
T  17689430 ttttagcaaatgctcatagaataacctactaaaagacatctttataaaatgtgtcttctaacaaaac 17689496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 27365782 - 27365716
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  27365782 ttttaacaaatgctcatagaataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 27365716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 28038295 - 28038362
Alignment:
Q  193 gttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||| ||||||||||||||| ||||||||||| || |||||| |||||||||| ||||||    
T  28038295 gttttagcaaatgctcatagaataacttgctaaaagacactttcataaaatgtgtcttctagcaaaac 28038362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 28813033 - 28813103
Alignment:
Q  102 gtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  28813033 gttttgctagaagccactcatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 28813103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 20269300 - 20269235
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    |||||||||||  |||||||||||||| |||||||||||||| ||||||| ||||||||| |||||    
T  20269300 ttttagcaaatgttcatagaataacttgctaaaagacaccttcataaaagctgtcttctagcaaaa 20269235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 9741792 - 9741726
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |||||||||||| ||  ||||||||||||| |||||| |||||||||| ||||||    
T  9741792 ttttagcaaatgctcatagaataatttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 9741726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 23204443 - 23204377
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| |||||||||||||||  ||||||||||||| ||||||| ||||||||| ||||||    
T  23204443 ttttaacaaatgctcatagaataacttgttaaaagacaccttcataaaagatgtcttctagcaaaac 23204377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 33429238 - 33429300
Alignment:
Q  198 agcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||| ||||||||||||||| ||||||| |||||| |||||| |||||||||| ||||||    
T  33429238 agcaaatgctcatagaataacttgctaaaaggcaccttcataaaatgtgtcttctagcaaaac 33429300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 38758724 - 38758778
Alignment:
Q  206 ctcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||    
T  38758724 ctcatagaataacttgctaaaagacaccttcataaaatgtgtcttctagcaaaac 38758778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 9741908 - 9741839
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||| |||  |||||||||||||||| ||||||||| || || |||||||||||||||||||    
T  9741908 ttttgctagaagccactcatgaaggtgtcttttagcaacccacatctcaaggtgtgatttccacttttta 9741839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 15978869 - 15978804
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    |||||||||||||||||||| ||| || |||||||||||||| |||||| |||||| ||| |||||    
T  15978869 ttttagcaaatactcatagattaatttgctaaaagacaccttcataaaatgtgtctcctaccaaaa 15978804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 16490718 - 16490763
Alignment:
Q  127 gtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||    
T  16490718 gtgtcttttagcaacccacaccttaaggtgtgatttccacttttta 16490763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 18015820 - 18015756
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    ||||||| |||  |||||| ||||||||| |||||||||||| || |||||||||||||||||||    
T  18015820 ctagaagccacccatgaagatgtcttttagcaacccacacctcaaggtgtgatttccacttttta 18015756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 19995460 - 19995389
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  ||||||| |||||||| ||| |||||||| || |||||||||||||||||||    
T  19995460 ggttttgctagaagccacccatgaaggggtcttttagcaatccacacctcaaggtgtgatttccacttttta 19995389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 23204561 - 23204490
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||  ||||||| || |||||||||||||||||||    
T  23204561 ggttttgctagaagccacccatgaaggtgtcttttagcaagtcacacctcaaggtgtgatttccacttttta 23204490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 37172484 - 37172543
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttcta 253  Q
    ||||||||||| ||| |||||||||||  ||||||||||||| |||||||||| ||||||    
T  37172484 ttttagcaaatgctcgtagaataacttgttaaaagacaccttcataaaaggtgacttcta 37172543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 38758595 - 38758666
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| ||||||||| || || ||||||||| |||||||||    
T  38758595 ggttttgctagaagccactcatgaaggtgtcttttagcaacccacatctcaaggtgtgattttcacttttta 38758666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 16994231 - 16994297
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| ||||||||||||||| |||||  ||||||| |||||| |||||||||| ||||||    
T  16994231 ttttaacaaatgctcatagaataacttgctaaacaacaccttcataaaatgtgtcttctagcaaaac 16994297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 19323812 - 19323858
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  19323812 ataacttgctaaaagacaccttcataaaaggtgtcttctagcaaaac 19323858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 21913838 - 21913904
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||||||| |  |||| ||||||| |||||||||||||| ||||| ||||||||||| ||||||    
T  21913838 ttttagcaaatgcctataggataacttgctaaaagacaccttcataaagggtgtcttctagcaaaac 21913904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 17689315 - 17689384
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||| |||  || ||||||||||||| ||| ||||||||||| ||||||||| |||||||||    
T  17689315 ttttgctagaagccacccattaaggtgtcttttagcaatccacaccttaaggtgtgattttcacttttta 17689384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 37172386 - 37172437
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| ||| ||| ||||||| ||||||||| |||||||||    
T  37172386 atgaaggtgtcttttagcaatccataccttaaggtgtgattttcacttttta 37172437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 38293472 - 38293523
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||||||||| |||||||| |  |||||||||||||||||||    
T  38293472 atgaagatgtcttttaacaatccacacctcatggtgtgatttccacttttta 38293523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 15388222 - 15388268
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||| ||||||||||| |||||||||||||| ||||| ||||||    
T  15388222 ataacttgctaaaagacacatttataaaaggtgtgttctagcaaaac 15388268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 16273677 - 16273723
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||||| |||||||||||||| ||||| ||||||||||| ||||||    
T  16273677 ataacttgctaaaagacaccttcataaagggtgtcttctagcaaaac 16273723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 25593357 - 25593304
Alignment:
Q  120 tatgaaggtgtcttttaacaacccacaccttaatgtgtgatt-tccacttttta 172  Q
    ||||||||||||||||| |||| |||||||||| |||| ||| |||||||||||    
T  25593357 tatgaaggtgtcttttagcaactcacaccttaaggtgtaattatccacttttta 25593304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 31056485 - 31056530
Alignment:
Q  215 taacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  31056485 taacttgctaaaatacaccttcataaaaggtgtcttctagcaaaac 31056530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 13960484 - 13960528
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttcta 253  Q
    |||| ||||||| |||||||||||||| |||||| ||||||||||    
T  13960484 ataggataacttgctaaaagacaccttcataaaaagtgtcttcta 13960528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 19325130 - 19325166
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagac 230  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  19325130 ttttagcaaatgctcatagaataacttgctaaaagac 19325166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 18102622 - 18102558
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  18102622 ctagaagtcacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 18102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 15081305 - 15081234
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  15081305 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 15081234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 18096397 - 18096331
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| ||||| ||||||||||||||| |||||||||||||| | ||||| ||||||||| ||||||    
T  18096397 ttttaacaaatgctcatagaataacttgctaaaagacaccttcacaaaagatgtcttctagcaaaac 18096331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 6322654 - 6322603
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| ||| ||||||||||| ||||| |||||||||||||    
T  6322654 atgaaggtgtcttttagcaatccacaccttaaggtgtggtttccacttttta 6322603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 7190780 - 7190709
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| ||| ||||||||||| ||||||||| ||| |||||    
T  7190780 ggttttgctagaagccactcatgaaggtgtcttttagcaaaccacaccttaaggtgtgattttcacctttta 7190709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 12159440 - 12159491
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| || ||||||||| |||||||||    
T  12159440 atgaaggtgtcttttagcaacccacacctcaaggtgtgattttcacttttta 12159491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 14975378 - 14975449
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| ||||||||||||||| || |||||| ||| |||||    
T  14975378 ggttttgctagaagccacccatgaaggtgtcttttagcaacccacaccttaaggtatgattttcacctttta 14975449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 18096485 - 18096438
Alignment:
Q  125 aggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||    
T  18096485 aggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 18096438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 19102056 - 19102118
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttc 163  Q
    |||||| |||||||||| | |||||||||||||||| ||| |||||||| || ||||||||||    
T  19102056 ggttttgctagaagtcatacatgaaggtgtcttttagcaatccacacctcaaggtgtgatttc 19102118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 10075059 - 10074994
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaa 259  Q
    ||||| |||||| ||||| ||||||||  |||||||||| || ||||||||||||||||| |||||    
T  10075059 ttttaacaaatattcataaaataacttgttaaaagacactttcataaaaggtgtcttctagcaaaa 10074994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 10075154 - 10075105
Alignment:
Q  124 aaggtgtcttttaacaacccacaccttaatgtgtgatttccactttttaa 173  Q
    ||||||||||||| |||| ||||||| || ||||||||||||||||||||    
T  10075154 aaggtgtcttttagcaactcacacctcaaggtgtgatttccactttttaa 10075105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 15081187 - 15081138
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaag 243  Q
    ||||| ||||| ||||||||||||||| |||||||||||||| |||||||    
T  15081187 ttttaacaaatgctcatagaataacttgctaaaagacaccttcataaaag 15081138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 17347136 - 17347200
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaa 258  Q
    ||||| ||||| || ||| |||||||| |||||||||||||| |||||| |||||||||| ||||    
T  17347136 ttttaacaaatgctaatataataacttgctaaaagacaccttcataaaatgtgtcttctagcaaa 17347200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 9533416 - 9533365
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||| |||||||||| ||| || |||||||||| ||||||||||    
T  9533416 atagaataacttactaaaagacatcttcattaaaggtgtctcctaacaaaac 9533365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 9891424 - 9891373
Alignment:
Q  209 atagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||| |||| || |||||||||||||||||||||||| ||||||| ||||||    
T  9891424 ataggataatttgctaaaagacacctttataaaaggtatcttctagcaaaac 9891373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 12159544 - 12159595
Alignment:
Q  200 caaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttc 251  Q
    ||||| || ||| |||||||| |||||||||||||| |||||||||||||||    
T  12159544 caaatgctaatataataacttgctaaaagacaccttcataaaaggtgtcttc 12159595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 9218 - 9159
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttcta 253  Q
    ||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||    
T  9218 ttttagcaaatgctcatagaataacttgctaaaatacaccttcataaaaggtgtcttcta 9159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 9315 - 9264
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||  ||| |||||||| || |||||||||||||||||||    
T  9315 atgaaggtgtcttttcgcaatccacacctcaaggtgtgatttccacttttta 9264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 8500 - 8571
Alignment:
Q  101 ggtttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||| ||||||| |||  |||||||||||||||| ||| |||||||| || |||||||||||||||||||    
T  8500 ggttttgctagaagccacccatgaaggtgtcttttagcaatccacacctgaaggtgtgatttccacttttta 8571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 94801 - 94852
Alignment:
Q  121 atgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  94801 atgaaggtgtcttttagcaacccacacctcaaggtgtgatttccacttttta 94852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 478376 - 478317
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttcta 253  Q
    ||||| |||||  |||||||||||||| |||||| ||||||| |||||| ||||||||||    
T  478376 ttttaacaaatgttcatagaataacttgctaaaaaacaccttcataaaaagtgtcttcta 478317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 17963 - 17899
Alignment:
Q  108 ctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||||||||||  |||||||||||||||| |||| ||| ||| || |||||||||||||||||||    
T  17963 ctagaagtcacccatgaaggtgtcttttagcaactcacgcctcaaggtgtgatttccacttttta 17899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 121723 - 121791
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaactc 262  Q
    ||||||||||| |||||||||||||||  ||||||||||||| |||||| |||| || || ||||||||    
T  121723 ttttagcaaatgctcatagaataacttgttaaaagacaccttcataaaatgtgttttatagcaaaactc 121791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 231219 - 231285
Alignment:
Q  194 ttttagcaaatactcatagaataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    ||||| |||||  ||||||||||| ||  ||||||||||||| |||||| |||||||||| ||||||    
T  231219 ttttaacaaatgttcatagaataatttgttaaaagacaccttcataaaatgtgtcttctagcaaaac 231285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 88218 - 88264
Alignment:
Q  214 ataacttcctaaaagacacctttataaaaggtgtcttctaacaaaac 260  Q
    |||||||||||||||||||||| ||||| ||| ||||||| ||||||    
T  88218 ataacttcctaaaagacaccttcataaagggtatcttctagcaaaac 88264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 75105 - 75036
Alignment:
Q  103 tttttctagaagtcacatatgaaggtgtcttttaacaacccacaccttaatgtgtgatttccacttttta 172  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||| |||  || |||||||||||||||||||    
T  75105 ttttgctagaagccacccatgaaggtgtattttagcaacccataccccaaggtgtgatttccacttttta 75036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University