View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_23 (Length: 337)
Name: NF19361_low_23
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 105 - 322
Target Start/End: Complemental strand, 37842361 - 37842145
Alignment:
| Q |
105 |
agagttgagggaaacacctatctttttagagaagtggaaatagtattctgtacactaatcatgaaaataaaataaaattgtgaggactaatatatgatat |
204 |
Q |
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| T |
37842361 |
agagttgagagaaacacctatctttttagagaagtgaaaatagtattctgtacactaatcatgaaaa-aaaataaaattgtgaggactaatatatgatat |
37842263 |
T |
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| Q |
205 |
atgttcaaagtacatctcatgatagaagactattacactaataaaatcggagacctagccctccaaaacgtattgttatccaagacgaggaccttaattt |
304 |
Q |
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| T |
37842262 |
atgttcaaagtacatctcatgatagaagactattacactaataaaatcggagacctagccctccaaaacgtattgttatccaagacgaggaccttaattt |
37842163 |
T |
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| Q |
305 |
tctgttttaggtgttttt |
322 |
Q |
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| T |
37842162 |
tatgttttaggtgttttt |
37842145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 37842407 - 37842359
Alignment:
| Q |
38 |
tgttaatggtgtgaattggagagaagaggatgcaaatgccattgagaga |
86 |
Q |
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| T |
37842407 |
tgttaatggtgtgaattggagagaagaggatgcaaatgccattgagaga |
37842359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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