View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_24 (Length: 318)
Name: NF19361_low_24
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 8410667 - 8410363
Alignment:
| Q |
1 |
tgtgtcttcagttccataagaagttcctggtttgataaacaacttataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattag |
100 |
Q |
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| T |
8410667 |
tgtgtcttcagttccataagaagttcctggtttgataaacaacttataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattag |
8410568 |
T |
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| Q |
101 |
agatcaaatttaagtgagaattatatttattccattaattaataactaccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatg |
200 |
Q |
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| T |
8410567 |
agatcaaatttaagtgagaattatatttattccattaattaataactaccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatg |
8410468 |
T |
|
| Q |
201 |
aaccctaagaaggtcttttggaaacacaatctcttctgagtctgtaaaacacacacgaaaacttccattccctaaatcttcgctaacacggccttcccac |
300 |
Q |
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| T |
8410467 |
aaccctaagaaggtcttttggaaacacaatctctcctgagtctgtaaaacacacacgaaaacttccattccctaaatcttcgctaacacggccttcccac |
8410368 |
T |
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| Q |
301 |
cacct |
305 |
Q |
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||||| |
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| T |
8410367 |
cacct |
8410363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 9139733 - 9139890
Alignment:
| Q |
147 |
taccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagtctgta |
246 |
Q |
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| T |
9139733 |
taccttatggtttgtgattgggggaacccaattgtgattaatccactggcgatgaatcctaagaaggtcttttggaaacaccatctcttccgagtctgta |
9139832 |
T |
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| Q |
247 |
aaacacacacgaaaacttccattccctaaatcttcgctaacacggccttcccaccacc |
304 |
Q |
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| T |
9139833 |
aaacacacaagaaatcttccattccctaaatctgcgctaacgcggccttcccaccacc |
9139890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 159 - 304
Target Start/End: Original strand, 8042122 - 8042267
Alignment:
| Q |
159 |
tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagtctgtaaaacacacacga |
258 |
Q |
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| T |
8042122 |
tgtgattggcggaacccaattgtgatttatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttccgagtctgtaaaacacacacgg |
8042221 |
T |
|
| Q |
259 |
aaacttccattccctaaatcttcgctaacacggccttcccaccacc |
304 |
Q |
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| T |
8042222 |
aaacttccattccctaaatcttcaataacgcggccttcccaccacc |
8042267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 8416158 - 8416064
Alignment:
| Q |
147 |
taccttatggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagt |
241 |
Q |
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| T |
8416158 |
taccttatggtttgtgattgggggaacccaattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttctgagt |
8416064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 8036693 - 8036770
Alignment:
| Q |
159 |
tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctcttc |
236 |
Q |
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| T |
8036693 |
tgtgactggcggaacccaattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacaccatctcttc |
8036770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 9139125 - 9139245
Alignment:
| Q |
5 |
tcttcagttccataagaagttcctggtttgataaacaactt--ataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattagag |
102 |
Q |
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||||| ||||| || ||||||||||||| |||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||| | |||||| |
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| T |
9139125 |
tcttctgttccctacgaagttcctggttggataaacaacttgtataaatatttaaagcattaacactgataatataagtatttatgtatgagacttagag |
9139224 |
T |
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| Q |
103 |
atcaaatttaagtgagaatta |
123 |
Q |
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| T |
9139225 |
actaaatttaagtgagaatta |
9139245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 8416311 - 8416228
Alignment:
| Q |
22 |
agttcctggtttgataaacaactt--ataaatatttatgccattagcactgaaaatataagtatttatgtatgaaaattagaga |
103 |
Q |
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| T |
8416311 |
agttcctggttggataaacaacttgtataaatatttatagcattaacactgataatataagtatttatgtatgagagttagaga |
8416228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 8359981 - 8360036
Alignment:
| Q |
154 |
tggtttgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaag |
209 |
Q |
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| T |
8359981 |
tggtttgtgattcggggaacccaattgtgattaatccatttacgatgaaccctaag |
8360036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 8041930 - 8041983
Alignment:
| Q |
6 |
cttcagttccataagaagttcctggtttgataaacaact--tataaatatttat |
57 |
Q |
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| T |
8041930 |
cttcagttccctacgaagttcctggtttgataaacaacttgtataaatatttat |
8041983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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