View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19361_low_26 (Length: 313)

Name: NF19361_low_26
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19361_low_26
NF19361_low_26
[»] chr5 (1 HSPs)
chr5 (1-298)||(7524686-7524983)
[»] chr1 (1 HSPs)
chr1 (1-298)||(38175622-38175937)
[»] chr4 (5 HSPs)
chr4 (131-298)||(49533850-49534021)
chr4 (1-109)||(49106621-49106730)
chr4 (1-107)||(50077291-50077397)
chr4 (40-105)||(49533756-49533821)
chr4 (40-109)||(49108765-49108834)
[»] chr8 (1 HSPs)
chr8 (1-192)||(40054128-40054327)
[»] chr2 (1 HSPs)
chr2 (1-203)||(43849851-43850064)
[»] chr6 (2 HSPs)
chr6 (1-107)||(10795982-10796088)
chr6 (1-107)||(10791744-10791850)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 7524983 - 7524686
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcattgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgcag 100  Q
    |||||||||||||||| ||||||  | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  7524983 gccgagaaaggtatgacttgaaacaacaccttgcattgcttttatatccactgtctactcagttcttttcttcattacccgatgtgggacttttatgcag 7524884  T
Q  101 caccaccttacacaccacttccgtttatcagctgctaagtttcgtttcccttaaatttttaacgtgatgcctccattatcaaaatggtaaataaatatca 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7524883 caccaccttacacaccacttccgtttatctgctgctaagtttcgtttcccttaaatttttaacgtgatgcctccagtatcaaaatggtaaataaatatca 7524784  T
Q  201 tatctcaaattaaaatcaatcatacaaactatgaggccacacacacataatttcacaaactatgcaatcaatcatatctcagaagttgaaggctatgt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7524783 tatctcaaattaaaatcaatcatacaaactatgaggccacacacacataatttcgcaaactatgcaatcaatcatatctcagaagttgaaggctatgt 7524686  T

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Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 38175622 - 38175937
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcat-tgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgca 99  Q
    ||||||||||||||||||||||||||  ||| |||| |||||||||||  ||||| |||| ||||  |||||||||||||||||||||| ||| ||||||    
T  38175622 gccgagaaaggtatgagttgaaatgaagcctcgcatctgcttttatatgaactgtatacttagtttctttcttcattacccgatgtgggacttatatgca 38175721  T
Q  100 gcaccacctt-----------------acacaccacttccgtttatcagctgctaagtttcgtttcccttaaatttttaacgtgatgcctccattatcaa 182  Q
    | ||||||||                 | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  38175722 gtaccaccttgtgaccgactcttacttatacaccactcccgtttatctgctgctaagtttcgtttcccttaaatttttaacgtgatgcctccggcatcaa 38175821  T
Q  183 aatggtaaataaatatcatatctcaaattaaaatcaatcatacaaactatgaggccacacacacataatttcacaaactatgcaatcaatcatatctcag 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||    
T  38175822 aatggtaaataaatatcatatctcaaattaaaatcaatcatacaaactatgaggccacacacacaaaattttacaaactatgcaatcaatcatatctaag 38175921  T
Q  283 aagttgaaggctatgt 298  Q
    ||||||| ||||||||    
T  38175922 aagttgatggctatgt 38175937  T

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Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 131 - 298
Target Start/End: Original strand, 49533850 - 49534021
Alignment:
Q  131 gctgctaagtttcgtttccctta----aatttttaacgtgatgcctccattatcaaaatggtaaataaatatcatatctcaaattaaaatcaatcataca 226  Q
    ||||||| |||||||||||||||    || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49533850 gctgctatgtttcgtttcccttacttaaaattttaacgtgatgcctccagtattaaaatggtaaataaatatcatatctcaaattaaaatcaatcataca 49533949  T
Q  227 aactatgaggccacacacacataatttcacaaactatgcaatcaatcatatctcagaagttgaaggctatgt 298  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  49533950 aactatgaggccacacacacaaaattttacaaactatgcaatcattcatatctcagaagttgaaagctatgt 49534021  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 49106621 - 49106730
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcat-tgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgca 99  Q
    ||||||||||||||||||||||| |    || || | |||||||||||| |||||||| ||||||  |||||||||||||||||||||| ||| ||||||    
T  49106621 gccgagaaaggtatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgca 49106720  T
Q  100 gcaccacctt 109  Q
    | ||||||||    
T  49106721 gtaccacctt 49106730  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 50077291 - 50077397
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcat-tgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgca 99  Q
    |||||||||||||||||||||||  ||| || || | |||||||||||| |||||| ||| ||||  ||||||||||||||||| |||| ||| ||||||    
T  50077291 gccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-acttagtttctttcttcattacccgatatgggacttatatgca 50077389  T
Q  100 gcaccacc 107  Q
    | ||||||    
T  50077390 gtaccacc 50077397  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 49533756 - 49533821
Alignment:
Q  40 ttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgcagcacca 105  Q
    ||||||||| |||||||| ||||||  ||||||||||| |||||||||| ||||||||||| ||||    
T  49533756 ttttatatcaactgtctaatcagtttctttcttcattagccgatgtgggacttttatgcagtacca 49533821  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 49108765 - 49108834
Alignment:
Q  40 ttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgcagcaccacctt 109  Q
    ||||||||| |||||||| ||||||  |||| | ||||||||||||||| ||| ||||||| ||||||||    
T  49108765 ttttatatcaactgtctattcagttcctttccttattacccgatgtgggacttatatgcagtaccacctt 49108834  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 40054327 - 40054128
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcat-tgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgca 99  Q
    |||||||||||||||| || ||||||| ||| |||| | |||||||||||| |||||||||||||  |||||||||||  ||||||||| ||||||||||    
T  40054327 gccgagaaaggtatgaattaaaatgaggcctcgcatcttcttttatatccagtgtctactcagttcctttcttcattattcgatgtgggacttttatgca 40054228  T
Q  100 gcaccacctt---ac----acaccacttccgtttatcagctgctaagtttcgtttcccttaaatttttaacgtgatgcctccattatcaaaatggtaaat 192  Q
    | |  |||||   ||    |||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  40054227 gtagtaccttgggactattacaccattcccgtttatctgctgctaagtttcgtttcccttatatttttaacgtgatgcctccagtatcaaaatggtaaat 40054128  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 43850064 - 43849851
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcat-tgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgca 99  Q
    |||||||||||||||||||||||| || |   |||| ||||||||||||| |||||||||||| |  |||||| ||||||||||||||| || |   | |    
T  43850064 gccgagaaaggtatgagttgaaataaggctacgcatctgcttttatatcctctgtctactcagatcctttcttgattacccgatgtgggactatgcagta 43849965  T
Q  100 gcacc-----ac-cttacacaccacttccgtttatcagctgctaagtttcgtttccctta----aatttttaacgtgatgcctccattatcaaaatggta 189  Q
    |||||     || |||||||||  || || | |||| ||||||||||||||| |||||||    ||||||||| |||||||||||| |||||||||||||    
T  43849964 gcaccttgggactcttacacactgctcccatatatctgctgctaagtttcgtatcccttacttaaatttttaaggtgatgcctccagtatcaaaatggta 43849865  T
Q  190 aataaatatcatat 203  Q
    ||||||||||||||    
T  43849864 aataaatatcatat 43849851  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 10795982 - 10796088
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcat-tgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgca 99  Q
    |||||||||||||||||||||||  ||| || || | |||||||||||| |||||| ||||||||  |||||||||||||||||||||| ||| ||||||    
T  10795982 gccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-actcagtttctttcttcattacccgatgtgggacttatatgca 10796080  T
Q  100 gcaccacc 107  Q
    | ||||||    
T  10796081 gtaccacc 10796088  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 10791744 - 10791850
Alignment:
Q  1 gccgagaaaggtatgagttgaaatgagaccttgcat-tgcttttatatccactgtctactcagttattttcttcattacccgatgtgggccttttatgca 99  Q
    |||||||||||||||||||||||  |||  | || | |||||||||||| |||||| ||| ||||  ||||||||||||||||| |||| ||| ||||||    
T  10791744 gccgagaaaggtatgagttgaaagaagagttggcttctgcttttatatcaactgtc-acttagtttctttcttcattacccgatatgggacttatatgca 10791842  T
Q  100 gcaccacc 107  Q
    | ||||||    
T  10791843 gtaccacc 10791850  T

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