View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_27 (Length: 311)
Name: NF19361_low_27
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 53126231 - 53126523
Alignment:
| Q |
1 |
aagatttacattggctttacatcccttaaaataaaatcaaacagctagagaagagaattaatttagtaagctaatatttatatcataccttgagttgttg |
100 |
Q |
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| T |
53126231 |
aagatttacattggctttacatcccttaaaataaaatcaaacagctagagaagagaattaatttagtaagctaatatttatatcataccttgagttgttg |
53126330 |
T |
|
| Q |
101 |
agcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaagctgaaaagtaacaagaaaacaatgagaagaatcaataagctgt |
200 |
Q |
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| T |
53126331 |
agcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaagctgaaaagtaacaagaaaacaatgagaagaatcaataagctgt |
53126430 |
T |
|
| Q |
201 |
tcacttgctcttaataataaatatcacctgagtttcattaacttacttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtt |
293 |
Q |
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| T |
53126431 |
tcacttgctcttaataataaatatcacctgagtttcattaacttacttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtt |
53126523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 293
Target Start/End: Original strand, 53108482 - 53108721
Alignment:
| Q |
56 |
aattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaa |
155 |
Q |
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| T |
53108482 |
aattaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcactactggatcattcaattcagtatagccgttgcaa |
53108581 |
T |
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| Q |
156 |
agctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcacttgctctta--ataataaatatcacctgagtttcattaacttacttcatgc |
253 |
Q |
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| T |
53108582 |
agctgaaaattaacagacaaacagtgacaagaatcaaaaagttgttaacttgcttttattttaataataatcacctgagtttcattaacttacttcatgc |
53108681 |
T |
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| Q |
254 |
ttattgacaaacaattcaaaacgctcggtcaggcctggtt |
293 |
Q |
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| T |
53108682 |
ttattgacgaacaattcaaaacgttcggtcaggcctggtt |
53108721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 293
Target Start/End: Original strand, 53113601 - 53113825
Alignment:
| Q |
63 |
ttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaagctgaa |
162 |
Q |
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| T |
53113601 |
ttagtaagctaatctttagatcataccttgagttgttcggcaaatctctgacgttgcactacaggatcattcaattcagtatatgcattggaaagctgaa |
53113700 |
T |
|
| Q |
163 |
aagtaacaagaaaacaatgagaagaatcaataagctgttcacttgctcttaataataaatatcacctgagtttcattaacttacttcatgcttattgaca |
262 |
Q |
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| T |
53113701 |
agttaacagaaaaacagtgacaagaatcaaaaagttgttaact-----ttactaataataatcgcctgag-ttcatgaacttactttaagcttattaaca |
53113794 |
T |
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| Q |
263 |
aacaattcaaaacgctcggtcaggcctggtt |
293 |
Q |
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| T |
53113795 |
atcaactcaaaacgttctgtcaggcctggtt |
53113825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 53117831 - 53117965
Alignment:
| Q |
36 |
atcaaacagctagagaagagaattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattca |
135 |
Q |
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| T |
53117831 |
atcaaacaattagagcacagacttaatttagtacgctaatctttacatcataccttgagttgttcggcaaatctctgacgttgcactactggatcattca |
53117930 |
T |
|
| Q |
136 |
gttcagtatatgcattgcaaagctgaaaagtaaca |
170 |
Q |
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| T |
53117931 |
attcagtatatgcattgcaaagctgaaaattaaca |
53117965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 53117999 - 53118047
Alignment:
| Q |
245 |
acttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtt |
293 |
Q |
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| T |
53117999 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggtt |
53118047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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