View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_28 (Length: 311)
Name: NF19361_low_28
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 40945085 - 40945380
Alignment:
| Q |
1 |
actgttatctagtgttgcagttgtcataagttaacaatcgttcatcctattcccacatattaagaattgattgttaatttgagaaaatactaaggtttgt |
100 |
Q |
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| T |
40945085 |
actgttatctagtgttgcagttgtcataagttaacaatcgttcatcctattcccacatattaagaattgattgttaatttgagaaaatactaaggtttgt |
40945184 |
T |
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| Q |
101 |
gatcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggtaatatt |
200 |
Q |
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| T |
40945185 |
gatcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggtaatatt |
40945284 |
T |
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| Q |
201 |
cctagcattatatctcaatgtaaacgtttcgtcgaaaaggatgggccaaagattccaccatcgaaaccttgttgtgcagcattgaaaggtgctaat |
296 |
Q |
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| T |
40945285 |
cctagcattatatctcaatgtaaacgtttcgtcgaaaaggatgggccaaagattccaccatcgaaaccttgttgtgcagcattgaaaggtgctaat |
40945380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 40953323 - 40953412
Alignment:
| Q |
105 |
atggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggt |
194 |
Q |
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| T |
40953323 |
atggcaactagatgcttaagctttgtaacattagttattactacaagcatcttagtgttaggaatttctggtcaatttgaatgtggtggt |
40953412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 40959803 - 40959895
Alignment:
| Q |
102 |
atcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggt |
194 |
Q |
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| T |
40959803 |
atcatggcaactagatacttacactttacaacattagttcttgccgtaagcatcttagtggtaggaatttctggtcaatttgaatgtggtggt |
40959895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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