View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_29 (Length: 310)
Name: NF19361_low_29
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_29 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 14924984 - 14925274
Alignment:
| Q |
9 |
gaggagcacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14924984 |
gaggaacacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
14925083 |
T |
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| Q |
109 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14925084 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
14925183 |
T |
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| Q |
209 |
tggaattgttgaagcatgcaagcgtcgcca------gaaaggagagaaaggaaagagagttggggcagctgcaagtggtgggccaatatgg |
293 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14925184 |
tggaattgttgaagcatgcaagcgtcgccaaattcgggaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatgg |
14925274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 11469252 - 11469201
Alignment:
| Q |
241 |
aaggagagaaaggaaagagagttggggcagctgcaagtggtgggccaatatg |
292 |
Q |
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| T |
11469252 |
aaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatg |
11469201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 12501 - 12791
Alignment:
| Q |
9 |
gaggagcacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
108 |
Q |
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| T |
12501 |
gaggaacaaagattcaccactcaatctaccatggatcttcaccattcttggtagtcactttataatactgcaagcgagacaatagaggtgaatcaggtga |
12600 |
T |
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| Q |
109 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
208 |
Q |
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| T |
12601 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcc |
12700 |
T |
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| Q |
209 |
tggaattgttgaagcatgcaagcgtcgccaga------aaggagagaaaggaaagagagttggggcagctgcaagtggtgggccaatatgg |
293 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12701 |
tggaattgttgaagcatgcaagcgtcaccagattcgggaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatgg |
12791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 10421315 - 10421033
Alignment:
| Q |
16 |
acagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtgatggtgtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
10421315 |
acagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcag-tgatgatgtt |
10421217 |
T |
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| Q |
116 |
tttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcctggaatt |
215 |
Q |
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| T |
10421216 |
tttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttcctcttatattcatcctggaatt |
10421117 |
T |
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| Q |
216 |
gttgaagcatgcaagcgtcgcca------gaaaggagagaaaggaaagagagttggggcagctgcaagtggtgggccaatatgg |
293 |
Q |
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| T |
10421116 |
gttgaagcatgcaagcgtcaccaaattcgggaaggagagaaagaaaagagagttggggcagctgcaagtggtgggtcaatatgg |
10421033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 6246955 - 6246903
Alignment:
| Q |
241 |
aaggagagaaaggaaagagagttggggcagctgcaagtggtgggccaatatgg |
293 |
Q |
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| T |
6246955 |
aaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatgg |
6246903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 45500838 - 45501022
Alignment:
| Q |
9 |
gaggagcacagattcaccactcaatctgccatggatcttcaccattcttggtagtcactttataatactgcaaacgagacaatagaggtgaatcaggtga |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45500838 |
gaggaacacagattcaccactcaatctgccatggatcttcaccattcttggtagccactttataatactgcaaacgagataatagaggtgaatcaggtga |
45500937 |
T |
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| Q |
109 |
tggtgtttttgtgtttgttgtggagacatagatgtggggtcaaattctcaaaaatcaagttccagcatgtgccatcactctgttc |
193 |
Q |
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| T |
45500938 |
tggtgtttttgtgtttgttgtggagacatagatgtgggatcaaattctcaaaaatcaagttccagcatgtgccatcactctgttc |
45501022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 12350528 - 12350580
Alignment:
| Q |
241 |
aaggagagaaaggaaagagagttggggcagctgcaagtggtgggccaatatgg |
293 |
Q |
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|||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
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| T |
12350528 |
aaggagagaaagaaaagagagttgggacagctacaagtggtgggccaatatgg |
12350580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 4555269 - 4555321
Alignment:
| Q |
241 |
aaggagagaaaggaaagagagttggggcagctgcaagtggtgggccaatatgg |
293 |
Q |
| |
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||||| ||||| ||||||||||||| |||||||||| ||||||||||||||| |
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| T |
4555269 |
aaggaaagaaataaaagagagttgggacagctgcaagcggtgggccaatatgg |
4555321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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