View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_30 (Length: 276)
Name: NF19361_low_30
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4128695 - 4128436
Alignment:
| Q |
1 |
tatttctctacaatgtagactattccaaggaagttttggcttgatgaa-gtggggagagattaatgcagtggccaattgaagaattagaaaaactttgtg |
99 |
Q |
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| T |
4128695 |
tatttctctacaatgtagactattccaaggaagttttggcttgatgaaagtggggagagattaatgcagtggccaattgaagagttagaaaaacttggtg |
4128596 |
T |
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| Q |
100 |
gcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgcatg |
199 |
Q |
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| T |
4128595 |
gcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatcacaggtacgtaattaaactaatgcatg |
4128496 |
T |
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| Q |
200 |
ttgtgtgttttttcttatgaagcacgaacacgggacatgacacttatattaacacttgtaaa |
261 |
Q |
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| T |
4128495 |
tt--gtgttttttcctatgaagcacgaacacgggacatgacacttatattaacacttgtaaa |
4128436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 4137300 - 4137098
Alignment:
| Q |
9 |
tacaatgtagactattccaaggaagttttggcttgatga-agtggggagagattaatgcagtggccaattgaagaattagaaaaactttgtggcaatcaa |
107 |
Q |
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| T |
4137300 |
tacaatgtagacaattccaaggaagttctggcttgataagaatgggaagcaattaatgcaatggccaattgaagagttagaaaaacttcgtggcaaacaa |
4137201 |
T |
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| Q |
108 |
atcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgcatgttgtgtgt |
207 |
Q |
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| T |
4137200 |
atcaatatcaccggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatctcaggtacacaactaaactgattcatgttgtgtgt |
4137101 |
T |
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| Q |
208 |
ttt |
210 |
Q |
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||| |
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| T |
4137100 |
ttt |
4137098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 4142378 - 4142137
Alignment:
| Q |
3 |
tttctctacaatgtagactattccaaggaagttttggcttgatgaa-gtggggagagattaatgcagtggccaattgaagaattagaaaaactttgtggc |
101 |
Q |
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| T |
4142378 |
tttctctacaatgtagacaattccaaggaagttttggcttgatgaaagtgggaagcgattactgcagtggccaatcgaagagttagaacaactacgttac |
4142279 |
T |
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| Q |
102 |
aatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgcatgtt |
201 |
Q |
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| T |
4142278 |
aatcaaatcaatatcactagagagacactcctaagtggatcaactcttgaagtaataggtatcactgcatctcaggtacgtaattaaatcgatgcatgct |
4142179 |
T |
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| Q |
202 |
gtgtgttttttcttatgaagcacgaacacgggacatgacact |
243 |
Q |
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| T |
4142178 |
atgagttttctcctacgaagtacagacacaagacatgacact |
4142137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4117450 - 4117370
Alignment:
| Q |
12 |
aatgtagactattccaaggaagttttggcttgatgaa-gtggggagagattaatgcagtggccaattgaagaattagaaaa |
91 |
Q |
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| T |
4117450 |
aatgtagacaattccaaggaaagtttggctagataaaagtgggaagagattgatgcaatggccaattgaagaaatagaaaa |
4117370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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