View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_31 (Length: 266)
Name: NF19361_low_31
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 11848554 - 11848793
Alignment:
| Q |
11 |
taattctcttggaggtaattttcctaatagtttatctggtagttctatagagaacctttgggtgaataatcaaaatggtaataaactcaatggtacactt |
110 |
Q |
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| T |
11848554 |
taattctcttggaggtaatttgcctaatagtttatctggtagttctatagagaacctttgggtgaataatcaaaatggtaataaactcaatggtacactt |
11848653 |
T |
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| Q |
111 |
tctgttttgcaaaatatgacatcgttgaaagtaatttgggttcaaggtaatgcttttactggtccaataccagatttttcaaatcatgatcaattgtctg |
210 |
Q |
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| T |
11848654 |
tctgttttgcaaaatatgacgtcgttgaaagtaatttgggttcaaagtaatgcttttactggtccaataccagatttttcaaatcatgatcaattgtctg |
11848753 |
T |
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| Q |
211 |
aagttagtttcagggataatcagttaaccggtgttgttcc |
250 |
Q |
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| T |
11848754 |
aagttagtttcagagataatcagttaaccggtgttgttcc |
11848793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 11835169 - 11835410
Alignment:
| Q |
12 |
aattctcttggaggtaattttcctaatagtttatctggtagttctatagagaacctttgggtgaataatcaaaa---tggtaataaactcaatggtacac |
108 |
Q |
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| T |
11835169 |
aattctcttgaagggaatttgcctaatagtttatctggtagttctatattgaatctttgggtaaatggtcaaaagagtaataataaactcaatggcacac |
11835268 |
T |
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| Q |
109 |
tttctgttttgcaaaatatgacatcgttgaaagtaatttgggttcaaggtaatgcttttactggtccaataccagatttttcaaatcatgatcaattgtc |
208 |
Q |
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| T |
11835269 |
tttctgttttgcaaaatatgacatcgttgaaacaaatttgggttcatggtaattcgtttactggtccaatacctgatttatcgaatcatgatcaattgtt |
11835368 |
T |
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| Q |
209 |
tgaagttagtttcagggataatcagttaaccggtgttgttcc |
250 |
Q |
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| T |
11835369 |
tgatgttagtttgagagataatcagttaaccggtgttgttcc |
11835410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 11858595 - 11858354
Alignment:
| Q |
12 |
aattctcttggaggtaattttcctaatagtttatctggtagttctatagagaacctttgggtgaataatcaaaatgg---taataaactcaatggtacac |
108 |
Q |
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| T |
11858595 |
aattttcttgaaggtaatttgcctaatagtttatctggtagttctatagagaaactttgggtaaatggtcaaagtagtattaatagactcaatggcacac |
11858496 |
T |
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| Q |
109 |
tttctgttttgcaaaatatgacatcgttgaaagtaatttgggttcaaggtaatgcttttactggtccaataccagatttttcaaatcatgatcaattgtc |
208 |
Q |
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| T |
11858495 |
tttctgttttgcaaaatttgacatcattgaaacaaatttgggtacatggtaattcgtttactggtcgtatacctgatttatcaaatcatgatcaattgtt |
11858396 |
T |
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| Q |
209 |
tgaagttagtttcagggataatcagttaaccggtgttgttcc |
250 |
Q |
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| T |
11858395 |
tgatgttagtttgagagataatcagttaaccggtgttgttcc |
11858354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 44798179 - 44798019
Alignment:
| Q |
90 |
aataaactcaatggtacactttctgttttgcaaaatatgacatcgttgaaagtaatttgggttcaaggtaatgcttttactggtccaataccagattttt |
189 |
Q |
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| T |
44798179 |
aataaactcaatggtacccttattgtgttacaaaacatgacatctttgaaacaaatatgggttaacgataattcatttacaggtcctatacccgatttat |
44798080 |
T |
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| Q |
190 |
caaatcatgatcaattgtctgaagttagtttcagggataatcagttaaccggtgttgttcc |
250 |
Q |
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| T |
44798079 |
cacagcttaaccaactatctgatgtgaatttaagggataaccagttgactggtgttgttcc |
44798019 |
T |
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