View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_32 (Length: 249)
Name: NF19361_low_32
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_32 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 41896836 - 41896603
Alignment:
| Q |
16 |
caatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgacgataacatacttatgtcacttgaaagaccttcatggcttgt |
115 |
Q |
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| T |
41896836 |
caatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgatgataacatacttatgtcacttgaaagaccttcatggcttgt |
41896737 |
T |
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| Q |
116 |
tgcttctgctaatttgatggtattcatcaatgttcttggtagctaccaggtaggtctctatgcaaaaccaagacatgaaattggcgaaaatagcgacaat |
215 |
Q |
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| T |
41896736 |
tgcttctgctaatttgatggtattcatcaatgttcttggtagctaccaggtaggtctctatgcaaaaccaagacatgaaattggcgaaaatagcgacaat |
41896637 |
T |
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| Q |
216 |
tttgtgattataagcgaaaacaaacaatgttttt |
249 |
Q |
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| T |
41896636 |
tttgtgattataagcgaaaacaaaaaatgttttt |
41896603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 41891260 - 41891109
Alignment:
| Q |
16 |
caatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgacgataacatacttatgtcacttgaaagaccttcatggcttgt |
115 |
Q |
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| T |
41891260 |
caatatgttatttcccagttgcaatcattggatattggacttttggacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggcttat |
41891161 |
T |
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| Q |
116 |
tgcttctgctaatttgatggtattcatcaatgttcttggtagctaccaggta |
167 |
Q |
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| T |
41891160 |
tgcctctgctaacttgatggtattcatccatgttgttggtagctatcaggta |
41891109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 22550674 - 22550800
Alignment:
| Q |
16 |
caatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgacgataacatacttatgtcacttgaaagaccttcatggcttgt |
115 |
Q |
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||||||| |||||||| |||||| | ||||||||||| |||||| ||||||||| ||||| | |||||||||||||||||||| | ||||| | |
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| T |
22550674 |
caatatgttatttcccagttgcacttattggatattgggcatttggaagagatgttgaagataatgtgcttatgtcacttgaaagaccagcttggctcat |
22550773 |
T |
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| Q |
116 |
tgcttctgctaatttgatggtattcat |
142 |
Q |
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||| |||||||| |||||||||||||| |
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| T |
22550774 |
tgcctctgctaacttgatggtattcat |
22550800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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