View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_34 (Length: 247)
Name: NF19361_low_34
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28059130 - 28058901
Alignment:
| Q |
1 |
caacattaggtctagcgattcttcggcatcaaatcctacaatacattcggatctaaatcatcgtcaaggacaacaaccatttacttgctcatatattgtt |
100 |
Q |
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| T |
28059130 |
caacattaggtctagcgattcttcggcatcaaatcctacaatacattcggatctaaatcatcgtcaaggacaacaaccatttacttgctcatatattgct |
28059031 |
T |
|
| Q |
101 |
tcaattagtttagcctcaaatttagtttctaaatgcacctagcattaagagttaagaaatgaagtacataaaa-ctttgaaaatttaccccaataagtca |
199 |
Q |
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| T |
28059030 |
tcaattattttagcctcaaatttagtttctaaatgcacctagcattaagagttaagaaatgaagtacataaaagctttgaaaatttaccccaataagtca |
28058931 |
T |
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| Q |
200 |
tgcaaaaatgctaagaattagggcacaatg |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28058930 |
tgcaaaaatgctaagaattagggcacaatg |
28058901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 5894105 - 5894048
Alignment:
| Q |
116 |
tcaaatttagtttctaaatgcacctagcattaagagttaagaaatgaagtacataaaa |
173 |
Q |
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| T |
5894105 |
tcaaatttagtttcttaatgcacctagcattgagagttaagaaatgaagtacataaaa |
5894048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 5894021 - 5893977
Alignment:
| Q |
174 |
ctttgaaaatttaccccaataagtcatgcaaaaatgctaagaatt |
218 |
Q |
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| T |
5894021 |
ctttgaaaatatcccccaataagtcatgcaaaaatgctaagaatt |
5893977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 39703355 - 39703524
Alignment:
| Q |
4 |
cattaggtctagcgattcttcggcatcaaatcctacaatacattcggatctaaatcatcgtcaaggac-aacaaccatttacttgctcatatattgtttc |
102 |
Q |
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|||||||| || | ||||||| ||||||||||||| |||| ||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||| |
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| T |
39703355 |
cattaggtataacaattcttctgcatcaaatcctagaatatatttggatctaaatcatcgtcaagggccaacaaccatttacttgctcatgtattgcttc |
39703454 |
T |
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| Q |
103 |
aattagtttagcctcaaatttagtttctaaatgcacctagcattaagagttaagaaatgaagtacataaaa |
173 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||| | | |||| ||||||||||||||||||| |
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| T |
39703455 |
aattattttagcctcaaatttagtttctaaatgcacctggcaatgatagtt-agaaatgaagtacataaaa |
39703524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 927193 - 927294
Alignment:
| Q |
31 |
aaatcctacaatacattcggatctaaatcatcgtcaaggacaacaaccatttacttgctcatatattgtttcaattagtttagcctcaaatttagtttct |
130 |
Q |
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||||| || ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||| |
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| T |
927193 |
aaatcttagaatacgttcggatataaatcatggtcaaggccaacaaccatttacttgctcatatattgcttcaatta-tttaacctcaaatttagtctct |
927291 |
T |
|
| Q |
131 |
aaa |
133 |
Q |
| |
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||| |
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|
| T |
927292 |
aaa |
927294 |
T |
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