View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_35 (Length: 247)
Name: NF19361_low_35
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 41896324 - 41896084
Alignment:
| Q |
1 |
tacaatttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgct |
100 |
Q |
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| T |
41896324 |
tacaatttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgct |
41896225 |
T |
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| Q |
101 |
cccacatcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagat |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896224 |
cccacgtcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagat |
41896125 |
T |
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| Q |
201 |
gaattattttcttgtgaattatttcagcttccgactataat |
241 |
Q |
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|||||||||||||||||||||||||||||||| | |||||| |
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| T |
41896124 |
gaattattttcttgtgaattatttcagcttcctagtataat |
41896084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 41890707 - 41890577
Alignment:
| Q |
6 |
tttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccac |
105 |
Q |
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|||||||| | |||||||||||||||||||| ||||| || | |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41890707 |
tttgttgaaacgtttcagcttttacattattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccac |
41890608 |
T |
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| Q |
106 |
atcatattttgtaaggcactcttgtcctctc |
136 |
Q |
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| T |
41890607 |
ttcatattttgtaaggctctcttgtcctctc |
41890577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 22551861 - 22551979
Alignment:
| Q |
7 |
ttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccaca |
106 |
Q |
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||||| || |||| ||||||||||| | || ||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22551861 |
ttgttaatttgttgcagcttttacactttttattggggttacattccctttctttggcgatcttcttggcttctttggtggatttggttttgctcccact |
22551960 |
T |
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| Q |
107 |
tcatattttgtaaggcact |
125 |
Q |
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|||||||||||||| |||| |
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| T |
22551961 |
tcatattttgtaagccact |
22551979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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