View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19361_low_37 (Length: 241)

Name: NF19361_low_37
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19361_low_37
NF19361_low_37
[»] chr7 (3 HSPs)
chr7 (112-226)||(46936403-46936517)
chr7 (1-89)||(1818845-1818925)
chr7 (49-81)||(13165011-13165043)
[»] chr5 (3 HSPs)
chr5 (3-91)||(42639921-42640009)
chr5 (49-91)||(30909052-30909094)
chr5 (1-91)||(37999771-37999862)
[»] chr3 (2 HSPs)
chr3 (1-91)||(9102628-9102717)
chr3 (1-91)||(29447788-29447880)
[»] chr2 (2 HSPs)
chr2 (1-89)||(40730629-40730718)
chr2 (1-91)||(35673202-35673294)
[»] chr6 (1 HSPs)
chr6 (39-90)||(32451661-32451712)
[»] scaffold0758 (1 HSPs)
scaffold0758 (49-91)||(575-617)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 46936403 - 46936517
Alignment:
Q  112 agatagtgtaacttgatagacatgtgaaccatgaagcctgaatgtattaatgtacaaattctttaacattatcacacacggacaatgttaccatgtagat 211  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46936403 agatagtgtaacttcatagacatgtgaaccatgaagactggatgtattaatgtacaaattctttaacattatcacacacggacaatgttaccatgtcgat 46936502  T
Q  212 ttgacattagtgatt 226  Q
    |||||||||||||||    
T  46936503 ttgacattagtgatt 46936517  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1818925 - 1818845
Alignment:
Q  1 tttctcaatttgtaatttagtgttcaataatttattagatgtgtaaagaatttaagaaaaaccttgaca-ttttctgctttggttaatta 89  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||| |||||| |||||||||||||    
T  1818925 tttctcaatttgtaatttagtgttcaataatttatt---------aagaatttaagaaaaaccttgacatttttctactttggttaatta 1818845  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 13165043 - 13165011
Alignment:
Q  49 aatttaagaaaaaccttgacattttctgctttg 81  Q
    ||||||||||||||||||||||||||| |||||    
T  13165043 aatttaagaaaaaccttgacattttctactttg 13165011  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 42639921 - 42640009
Alignment:
Q  3 tctcaatttgtaatttagtgttcaataatttattagatgtgtaaagaatttaagaaaaaccttgacattttctgctttggttaattatt 91  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42639921 tctcaatttgtaatttagtgttcaataatttattatatgtgtaaagaatttaagaaaaaccttgacattttctactttggttaattatt 42640009  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 30909052 - 30909094
Alignment:
Q  49 aatttaagaaaaaccttgacattttctgctttggttaattatt 91  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  30909052 aatttaagaaaaaccttgacattttctactttagttaattatt 30909094  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 37999771 - 37999862
Alignment:
Q  1 tttctcaatttgtaatttagt-gttcaataatttattagatgtgtaaagaatttaagaaaaaccttgacattttctgctttggttaattatt 91  Q
    ||||||||||||| |||| || |||| | ||||||||  ||||||  | ||||||||||||| ||||||||||||| |  ||||||||||||    
T  37999771 tttctcaatttgtcatttggttgttcgaaaatttatttcatgtgtggaaaatttaagaaaaaacttgacattttctcccgtggttaattatt 37999862  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 9102628 - 9102717
Alignment:
Q  1 tttctcaatttgtaatttagtgttcaataatttattagatgtgtaaagaatttaagaaaaaccttgacattttctgctttggttaattatt 91  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  9102628 tttctcaatttgtaatttagagttcaataatttattatatgtgtaaagaatttaagaaaaaccttgacattttctacttt-gttaattatt 9102717  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29447788 - 29447880
Alignment:
Q  1 tttctcaatttgtaatttagt-gttcaataatttattag-atgtgtaaagaatttaagaaaaaccttgacattttctgctttggttaattatt 91  Q
    ||||||||||||| ||||||| |||| | ||||||||   ||| ||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  29447788 tttctcaatttgttatttagttgttcgacaatttatttttatgggtaaaaaatttaagaaaaactttaacattttctactttggttaattatt 29447880  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 40730718 - 40730629
Alignment:
Q  1 tttctcaatttgtaatttagtgttcaataatttattagatgtgtaaagaatttaagaaaaaccttgaca-ttttctgctttggttaatta 89  Q
    |||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||| |||||| |||||||||||||    
T  40730718 tttctcaatttgtaatttagtgttaaataatttattatatgcataaagaatttaagaaaaaccttgacatttttctactttggttaatta 40730629  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35673294 - 35673202
Alignment:
Q  1 tttctcaatttgtaatttagt-gttcaataatttattag-atgtgtaaagaatttaagaaaaaccttgacattttctgctttggttaattatt 91  Q
    ||||||||||||| ||||||| |||| | ||||||||   ||| || || ||||||||||||||||||||||||||| |||||||||||||||    
T  35673294 tttctcaatttgttatttagttgttcgacaatttatttttatgggtgaaaaatttaagaaaaaccttgacattttctactttggttaattatt 35673202  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32451712 - 32451661
Alignment:
Q  39 atgtgtaaagaatttaagaaaaaccttgacattttctgctttggttaattat 90  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  32451712 atgtgaaaacaatttaagaaaaaccttgacattttctactttggttaattat 32451661  T

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Target: scaffold0758 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 617 - 575
Alignment:
Q  49 aatttaagaaaaaccttgacattttctgctttggttaattatt 91  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  617 aatttaagaaaaaccttgacattttctactttggttaattatt 575  T

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