View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_4 (Length: 665)
Name: NF19361_low_4
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 243 - 592
Target Start/End: Complemental strand, 32063081 - 32062724
Alignment:
| Q |
243 |
gtatatatcaaggccgtgacagtagattttgaataaaatctcatccctgtagcatcgtttactttgcttgcaattggtttatgttgtttatagactaagc |
342 |
Q |
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| T |
32063081 |
gtatatatcaaggccgtgacagtagattttgaataaaatctcatccctgtagcaacatttactttgcttgcaattggtttatgttgtttatagactaagc |
32062982 |
T |
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| Q |
343 |
ctacaatgcacaacatcaaaagtatgatgcagtactttagtaataatctgcgtatagaatcaattgcaagcatgactcaacaatcaagtgtaataacctg |
442 |
Q |
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| T |
32062981 |
ctacaatgcacaacatcaaaagtatgatgcagtccttcagtaataatctgcatatggaatcaattgcaaacacgac-cagcaatcaagtgtaataacctg |
32062883 |
T |
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| Q |
443 |
cttatcgaatcaattgcaaatatttaagcacgactcaacaatcaaaggaaataaattgtcagccaaaggcacaataaagcccaaaaatttc--------- |
533 |
Q |
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| T |
32062882 |
cttattgaatcaattgcaaatatttaagcacgaatcagcaatcaaagataataaattgccagcaaaaggcacaataaagcccaaaaaattctaccattca |
32062783 |
T |
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| Q |
534 |
taccatttgcccattccttgtctagccagatatattaagaacttatatctgttaaactt |
592 |
Q |
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| T |
32062782 |
taccatttgcctatttcttgtcttgccagatatattaagagcatatatctggtaaactt |
32062724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 32063312 - 32063144
Alignment:
| Q |
11 |
acatcatcattccactttgactgcaagtagatagttgcggccaatactaaatttatgacataaacatgagagaaatttccttggaacaaattcataaaaa |
110 |
Q |
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| T |
32063312 |
acatcatcattccactttgactgcaagaagatagttgtggccaatactacatttatgacataaacatgagagaaatttccttggaacaaattcataaaaa |
32063213 |
T |
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| Q |
111 |
atatcatttcaatccctaatcatgaaaatcaatccaagtcctcaccaaacgctctaccatggttgattt |
179 |
Q |
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| T |
32063212 |
atatcatttcaatccctaatcatgaaaatcaatccaagtgctcaccaaacgctctaccatggttgattt |
32063144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 245 - 411
Target Start/End: Complemental strand, 51279473 - 51279307
Alignment:
| Q |
245 |
atatatcaaggccgtgacagtagattttgaataaaatctcatccctgtagcatcgtttactttgcttgcaattggtttatgttgtttatagactaagcct |
344 |
Q |
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| T |
51279473 |
atatatcaaggccgttgcaatagattttgaataaaatggcatcgctatagcagcatttacttggcttgcaattggtttgtgtcgtttatagcctaagtct |
51279374 |
T |
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| Q |
345 |
acaatgcacaacatcaaaagtatgatgcagtactttagtaataatctgcgtatagaatcaattgcaa |
411 |
Q |
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| T |
51279373 |
acaatgcacaacctcaaaagtatgatgcatttcttaagtaataatatgcatatagaaacaattgcaa |
51279307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 51279188 - 51279103
Alignment:
| Q |
308 |
gcttgcaattggtttatgttgtttatagactaagcctacaatgcacaacatcaaaagtatgatgcagtactttagtaataatctgc |
393 |
Q |
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| T |
51279188 |
gcttgcaattgatttgtgttgtttatagcctaagcttacaatgcacaacttcaaaagtatgatgcagtccttacgcaataatctgc |
51279103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 662
Target Start/End: Complemental strand, 30593812 - 30593766
Alignment:
| Q |
616 |
aattgtgccgtgcatgcaacaagaattaaaatttccaataaataatt |
662 |
Q |
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| T |
30593812 |
aattgtgccttgaatgcatcaagtattaaaatttccaataaataatt |
30593766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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