View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19361_low_7 (Length: 549)
Name: NF19361_low_7
Description: NF19361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19361_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 46467269 - 46466756
Alignment:
| Q |
16 |
ataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccatgat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467269 |
ataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccatgat |
46467170 |
T |
|
| Q |
116 |
taggagtcaaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataagttt |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467169 |
taggagtcaaaagtgccctaagcacatccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataagttt |
46467070 |
T |
|
| Q |
216 |
cacattgttatcactatgagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcagaactaagtgaaacaagtgcaccagca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46467069 |
cacattgttatcactatgagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcag---taagtgaaacaagtgcaccagca |
46466973 |
T |
|
| Q |
316 |
cattcataaacaacatcattagaacttgcactcaacaaatacttaacaatcgcgatatattttgccttttcacccttattgttattcacagaaactttct |
415 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466972 |
cattcataaacaacagcattagaacttgcactcaacaaatacttaacaatcgcgatatattttgccttttcacccttattgttattcacagaaactttct |
46466873 |
T |
|
| Q |
416 |
taatcaattccaaaacaagcatttgaagctgttcactccaatcaagaatcctatcaatattcctaaaaagatatttgattgcacgatcctgagcacaaga |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466872 |
taatcaattccaaaacaagcatttgaagctgttcactccaatcaagaatcctatcaatattcctaaaaagatatttgattgcacgatcctgagcacaaga |
46466773 |
T |
|
| Q |
516 |
aatcagcataagaaaag |
532 |
Q |
| |
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||||||||||||||||| |
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| T |
46466772 |
aatcagcataagaaaag |
46466756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 110 - 524
Target Start/End: Complemental strand, 1472089 - 1471678
Alignment:
| Q |
110 |
catgattaggagtcaaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaat |
209 |
Q |
| |
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|||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
1472089 |
catgattaggagtcgataacgccctaagcacatccataaccatatcaaccataatctccctattatccctcttaagctcgttaagccgatcaagcacaat |
1471990 |
T |
|
| Q |
210 |
aagtttcacattgttatcactatgagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcagaactaagtgaaacaagtgca |
309 |
Q |
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||| ||||||||||||||||| ||||||| ||| |||| |||||||| | | ||||| |||| ||| || || |||||||||||||| |||||||| | | |
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| T |
1471989 |
aagcttcacattgttatcactctgagaaagcaataactgacaataagtattcgcagccgctttaatcgcggttggtgcagaactaagcgaaacaagcgta |
1471890 |
T |
|
| Q |
310 |
ccagcacattcataaacaacatcattagaacttgcactcaacaaatacttaacaatcgcgatatattttgccttttcacccttattgttattcacagaaa |
409 |
Q |
| |
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||||||||||||||||||||| || ||||| | |||||||||||| | ||| |||| |||||||| | || || |||||| |||||| | ||| |
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| T |
1471889 |
ccagcacattcataaacaacagcagtagaattagcactcaacaaagaaataataatcttaatatatttccctttctccccctta---ttattcctacaaa |
1471793 |
T |
|
| Q |
410 |
ctttcttaatcaattccaaaacaagcatttgaagctgttcactccaatcaagaatcctatcaatattcctaaaaagatatttgattgcacgatcctgagc |
509 |
Q |
| |
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||||||||||||||||||| || | |||||| | |||||| | |||||||| ||||||||||||||| |||||||||| || | |||||||| ||||| |
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| T |
1471792 |
ctttcttaatcaattccaacaccaccatttgtaactgttccccccaatcaataatcctatcaatatttgtaaaaagataattcacagcacgatcttgagc |
1471693 |
T |
|
| Q |
510 |
acaagaaatcagcat |
524 |
Q |
| |
|
||| |||| |||||| |
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| T |
1471692 |
acacgaaaacagcat |
1471678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 480 - 532
Target Start/End: Original strand, 55203001 - 55203053
Alignment:
| Q |
480 |
aaaaagatatttgattgcacgatcctgagcacaagaaatcagcataagaaaag |
532 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
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| T |
55203001 |
aaaaagatatttgatagcacgatcctgagcacaagaaaacggcataagaaaag |
55203053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 55202673 - 55202717
Alignment:
| Q |
130 |
gccctaagcacgtccataaccatatcaaccataatctccctatta |
174 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
55202673 |
gccctaagcacatccataaccatatcaaccataatttccctatta |
55202717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 450
Target Start/End: Original strand, 55202920 - 55202963
Alignment:
| Q |
407 |
aaactttcttaatcaattccaaaacaagcatttgaagctgttca |
450 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||| |||||| |
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| T |
55202920 |
aaactttcttaatcacttccaaaacaatcatttgaagttgttca |
55202963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 187202 - 187268
Alignment:
| Q |
31 |
tgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtg |
97 |
Q |
| |
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||||||||| |||||| ||||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
187202 |
tgagaaaattgcaatgcacgtttgagagggagaaagagtttttgactgtaagttgcaagtcaaggtg |
187268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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