View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19362_high_11 (Length: 203)

Name: NF19362_high_11
Description: NF19362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19362_high_11
NF19362_high_11
[»] chr4 (9 HSPs)
chr4 (14-186)||(37926524-37926696)
chr4 (25-125)||(21956833-21956933)
chr4 (16-51)||(8843897-8843932)
chr4 (16-51)||(8856861-8856896)
chr4 (16-51)||(33616208-33616243)
chr4 (28-66)||(25265225-25265263)
chr4 (16-50)||(36306752-36306786)
chr4 (16-74)||(54270583-54270641)
chr4 (28-68)||(4237370-4237410)
[»] chr6 (1 HSPs)
chr6 (16-69)||(1947865-1947918)
[»] chr1 (3 HSPs)
chr1 (16-125)||(39219220-39219329)
chr1 (16-126)||(48125700-48125810)
chr1 (16-49)||(13798200-13798233)
[»] chr5 (4 HSPs)
chr5 (16-50)||(12457478-12457512)
chr5 (16-125)||(38972883-38972992)
chr5 (16-68)||(8020576-8020628)
chr5 (22-50)||(17153136-17153164)
[»] chr8 (2 HSPs)
chr8 (16-69)||(6388579-6388632)
chr8 (16-49)||(14155493-14155526)
[»] chr3 (1 HSPs)
chr3 (16-49)||(42243348-42243381)
[»] chr2 (1 HSPs)
chr2 (16-68)||(11958977-11959029)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 37926524 - 37926696
Alignment:
Q  14 tgatatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtaccca 113  Q
    ||||||||||||| ||||||||| |||| |||||||||  ||||||||| |||||| ||||||| || |||||||||||||||||||| ||| |||||||    
T  37926524 tgatatgaaagggataataaattaatttactacattcaggatgagtttgggtatgggttcagaccgggtacttatatccctgttacttgtctggtaccca 37926623  T
Q  114 tgttttaaaatcattgtttaaaattaaattaaaggatgataaggataattttgcccaataaatttgatatctc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37926624 tgttttaaaatcattgtttaaaattaaattaaaggatgataaggataattttgcccaataaatttgatatctc 37926696  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 21956933 - 21956833
Alignment:
Q  25 gggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatgttttaaaat 124  Q
    ||||||||||||||||||||||||||  || ||||||| |||||| ||| |  |||  || |||||||| |||||| ||  ||||||| |||||||||||    
T  21956933 gggtaataaattgattttctacattcgtaacgagtttgggtatgggttcggggtgggcacctatatccccgttactcattccgtacccgtgttttaaaat 21956834  T
Q  125 c 125  Q
    |    
T  21956833 c 21956833  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 8843932 - 8843897
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattca 51  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8843932 atatgaaaggggtaataaattaattttctacattca 8843897  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 8856896 - 8856861
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattca 51  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8856896 atatgaaaggggtaataaattaattttctacattca 8856861  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 33616243 - 33616208
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattca 51  Q
    |||| |||||||||||||||||||||||||||||||    
T  33616243 atataaaaggggtaataaattgattttctacattca 33616208  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 25265263 - 25265225
Alignment:
Q  28 taataaattgattttctacattcaaaatgagtttgagta 66  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  25265263 taataaattgattttctacattcgagatgagtttgagta 25265225  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 36306752 - 36306786
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattc 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  36306752 atataaaaggggtaataaattgattttctacattc 36306786  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 54270583 - 54270641
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattca 74  Q
    |||| |||| ||||||||||||||||||||||||| | | |||||||| ||||| ||||    
T  54270583 atataaaagaggtaataaattgattttctacattctagaagagtttgaatatgggttca 54270641  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 4237410 - 4237370
Alignment:
Q  28 taataaattgattttctacattcaaaatgagtttgagtatg 68  Q
    ||||||||| ||||||||||||  |||||||||||||||||    
T  4237410 taataaattaattttctacatttgaaatgagtttgagtatg 4237370  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 1947918 - 1947865
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatgg 69  Q
    |||| |||||||||||||||||||||||||||||   || ||||||||||||||    
T  1947918 atataaaaggggtaataaattgattttctacatttggaacgagtttgagtatgg 1947865  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 39219220 - 39219329
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatg 115  Q
    |||| |||| ||||||||||| |||||||||||| | || ||||||| |||||| ||| |  ||| ||| | |||||| ||||||| |  ||||||| ||    
T  39219220 atataaaagaggtaataaattaattttctacatttagaacgagtttgggtatgggttcggggtgggtacatgtatccccgttacttgttccgtacccgtg 39219319  T
Q  116 ttttaaaatc 125  Q
    ||||||||||    
T  39219320 ttttaaaatc 39219329  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 48125810 - 48125700
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatg 115  Q
    |||| |||| |||| ||||||||||||||||||||   | ||||||| |||||| ||| |  ||||||| |||||||  |||||   || ||||||| ||    
T  48125810 atataaaagcggtagtaaattgattttctacattcgcgacgagtttgggtatgggttcggggtggatacctatatcctcgttacccgtcccgtacccgtg 48125711  T
Q  116 ttttaaaatca 126  Q
    |||||||||||    
T  48125710 ttttaaaatca 48125700  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 13798200 - 13798233
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacatt 49  Q
    |||| |||||||||||||||||||||||||||||    
T  13798200 atataaaaggggtaataaattgattttctacatt 13798233  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 12457478 - 12457512
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattc 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  12457478 atattaaaggggtaataaattgattttctacattc 12457512  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 38972883 - 38972992
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatg 115  Q
    |||| |||||| ||||||||||||||| | ||||  | ||| |||||||||||| ||| |  ||| ||| ||||| || ||||| |||| | ||||||||    
T  38972883 atataaaagggttaataaattgattttatgcatttgagatgggtttgagtatgggttcggggtgggtacctatattcccgttacctatcccatacccatg 38972982  T
Q  116 ttttaaaatc 125  Q
    |||| |||||    
T  38972983 ttttgaaatc 38972992  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 8020576 - 8020628
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatg 68  Q
    |||| ||||||||| ||||||||||||||||||||| || | ||||| |||||    
T  8020576 atataaaaggggtagtaaattgattttctacattcagaacgggtttgcgtatg 8020628  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 17153136 - 17153164
Alignment:
Q  22 aaggggtaataaattgattttctacattc 50  Q
    |||||||||||||||||||||||||||||    
T  17153136 aaggggtaataaattgattttctacattc 17153164  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 6388632 - 6388579
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatgg 69  Q
    |||| ||| |||||||||||||||||||||||||||  ||| ||||||| ||||    
T  6388632 atataaaatgggtaataaattgattttctacattcaggatgggtttgagcatgg 6388579  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 14155493 - 14155526
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacatt 49  Q
    |||| |||||||||||||||||||||||||||||    
T  14155493 atataaaaggggtaataaattgattttctacatt 14155526  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 42243348 - 42243381
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacatt 49  Q
    |||| |||||||||||||||||||||||||||||    
T  42243348 atataaaaggggtaataaattgattttctacatt 42243381  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 11958977 - 11959029
Alignment:
Q  16 atatgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatg 68  Q
    |||| |||| ||||||||||||||||| ||||||||  ||||||||| |||||    
T  11958977 atataaaagaggtaataaattgattttatacattcatgatgagtttgggtatg 11959029  T

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