View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19362_high_2 (Length: 422)
Name: NF19362_high_2
Description: NF19362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19362_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 9126210 - 9126601
Alignment:
| Q |
18 |
atcctaaacctaaggaatcaatatgcagcattccttgaagaccaaataccattaaacctctgtgttctttgtttaatctaaatgccatttgatgaattgc |
117 |
Q |
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| T |
9126210 |
atcctaaacctaaggaatcaatatgcagcattccttgaagaccaaataccattaaacctctgtgttctttgtttaatctaaatgccatttgatgaattgc |
9126309 |
T |
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| Q |
118 |
attgtttttggtaaagatacttggttttgcgacaaatgatagtgtgccttgcttgtttcttactctttgtcttctctctaaagttggaaaattaaagttg |
217 |
Q |
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| T |
9126310 |
attgtttttggtaaagatacttggttttgctacaaatgatagtgtgccttgcttgtttcttactctttgtcttctctctaaagttggaaaa-----gttg |
9126404 |
T |
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| Q |
218 |
attacaaaaggttttttatgctatatagtttgttggatgttatcagcactttgttacaattttcatgtcatttgtttcatttagacgcagaaggttctta |
317 |
Q |
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| T |
9126405 |
attacaaaaggtttattatgctatatagtttgttggatgttatcagcactttgttacaattttcatgtcatttgtttcattcagacgcagaaggttctta |
9126504 |
T |
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| Q |
318 |
gagcgctcaggttttcaaaaaagggctgctgcaactctttatgaaatgttttcgtcgttttcacatttttggtgctatgttccctgctattcatctc |
414 |
Q |
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| T |
9126505 |
gagcgctcagattttcaaaaaagggctgctgcaactctttatgaaatgttttcgtcgttttcacatttttggtgctatgttccctgctattcatctc |
9126601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 9162384 - 9162474
Alignment:
| Q |
234 |
tatgctatatagtttgttggatgtt--atcagcactttgttacaattttcatgtcatttgtttcatttagacgcagaaggttcttagagcg |
322 |
Q |
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| T |
9162384 |
tatgctatatagtttgctgggtgttctatcagcacttaatttcaatttttatatcatttgtttcattcaggcgcagaaggttcttagagcg |
9162474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Complemental strand, 3355675 - 3355637
Alignment:
| Q |
366 |
ttttcgtcgttttcacatttttggtgctatgttccctgc |
404 |
Q |
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| T |
3355675 |
tttttgtcgttttcacatttttggtactatgttccctgc |
3355637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 41620230 - 41620274
Alignment:
| Q |
165 |
cttgcttgtttcttactc-tttgtcttctctctaaagttggaaaa |
208 |
Q |
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| T |
41620230 |
cttgcttgtttcttactcctttgtcttctcttgaaagttggaaaa |
41620274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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