View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19362_high_4 (Length: 395)
Name: NF19362_high_4
Description: NF19362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19362_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 43992263 - 43992642
Alignment:
| Q |
16 |
catttctgaggttatgtggccttattttgcagtttacctcttgttgtagatagcaggggaaatatccgagtcattgcttttcaaaatccaagggtctttt |
115 |
Q |
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| T |
43992263 |
catttctgaggttatgtggccttattttgcaatttacctcttgttgtagatagcaggggaaatatccgagtcattgcttttcaaaatccaagggtctttt |
43992362 |
T |
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| Q |
116 |
tatgctagaaccagtgcactattgccccttccatactgatgaacacaaactacacttcctcactgggcttgattgttgtatcctataaagtttctccacc |
215 |
Q |
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| T |
43992363 |
tatgctagaaccagtgcactattgccccttccatactgatgaacacaaactacacttcctcactgggcttgattgttgtatcctataaagtttctccacc |
43992462 |
T |
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| Q |
216 |
ctagtaattctccctaagggatctttttcattagaagtaaaaagctccacctttcttaccatgatgaatttggtactcagaaaattatcatttttgttct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43992463 |
ctagtaattctccctaagggatctttttcattagaagtaaaaagctccacctttcttaccatgatgaatttggtactcagaaaattatcatttttgttct |
43992562 |
T |
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| Q |
316 |
ctctattcttccttccatctagaacttggaggccgattccatcctcctccattgccatccacccttactacatcatacct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43992563 |
ctctattcttccttccatctagaacttggaggccgattccatcctcctccattgccatccacccttactacatcatacct |
43992642 |
T |
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