View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19362_high_5 (Length: 380)
Name: NF19362_high_5
Description: NF19362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19362_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 49 - 377
Target Start/End: Complemental strand, 34525942 - 34525631
Alignment:
| Q |
49 |
atgtatgtatgatattatagtcagtttattaaaattacagtgagttatcgtaattttgtaaaagtttaaaagtatagtttctgcaaaattattataactc |
148 |
Q |
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| T |
34525942 |
atgtatgtttgatattatagccgatttattaaaattacagtgagttatcgtaattttgtaaaagtttaaaagtatagtttctgcaaaattattatatctc |
34525843 |
T |
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| Q |
149 |
attgtcaaaatttactgtaatattaaacatgcatataaacttatgatatccaaataatttgctagtcaaatttgggatatgtaatattagaaagnnnnnn |
248 |
Q |
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| T |
34525842 |
atcgtcaaaatttaccgtaatattaaacatgcatataaacttatgatatccaaa-------------aaatttgggatatgtaatattagcaa----aaa |
34525760 |
T |
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| Q |
249 |
nnnntcaaagataatttgcaatttttctatttctaaattttcttagttatttcaactttttctaatagttatactatcatttattgatttaataatttat |
348 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34525759 |
aaaatcaaagacaatttgcaatttttctatttctaaattttcgtagttatttcaactttttctaatagttatactatcatttattcatttaataatttat |
34525660 |
T |
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| Q |
349 |
ttgtgtgtaatagtataactcactttgcc |
377 |
Q |
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|| |||||||||||||||||||||||||| |
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| T |
34525659 |
ttatgtgtaatagtataactcactttgcc |
34525631 |
T |
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